TMalign.f: This program is to identify the best alignment of two protein structures that gives the highest TM-score. Input structures must be in the PDB format. By default, TM-score is normalized by the second protein. Users can obtain a brief instruction by simply running the program without arguments. For comments/suggestions, please contact email: zhng@umich.edu. Reference to cite: Yang Zhang, Jeffrey Skolnick, Nucl. Acid Res. 2005 33: 2303-9 Permission to use, copy, modify, and distribute this program for any purpose, with or without fee, is hereby granted, provided that the notices on the head, the reference information, and this copyright notice appear in all copies or substantial portions of the Software. It is provided "as is" without express or implied warranty. --- TMscore.f: This program is to compare two protein structures and identify the best superposition that has the highest TM-score. Input structures must be in the PDB format. By default, TM-score is normalized by the second protein. Users can obtain a brief instruction by simply running the program without arguments. For comments/suggestions, please contact email: zhng@umich.edu. Reference: Yang Zhang, Jeffrey Skolnick, Proteins, 2004 57:702-10. Permission to use, copy, modify, and distribute this program for any purpose, with or without fee, is hereby granted, provided that the notices on the head, the reference information, and this copyright notice appear in all copies or substantial portions of the Software. It is provided "as is" without express or implied warranty.