fitted.flash            Fitted method for flash objects
fitted.flash_fit        Fitted method for flash fit objects
flash                   Empirical Bayes matrix factorization
flash_add_intercept     Add "intercept" to a flash object
flash_backfit           Backfit a flash object
flash_clear_timeout     Set timeout
flash_conv_crit_elbo_diff
                        Calculate the difference in ELBO
flash_conv_crit_max_chg
                        Calculate the maximum absolute difference in
                        scaled loadings and factors
flash_conv_crit_max_chg_F
                        Calculate the maximum absolute difference in
                        scaled factors
flash_conv_crit_max_chg_L
                        Calculate the maximum absolute difference in
                        scaled loadings
flash_ebnm              Construct an EBNM function
flash_factors_fix       Fix flash factors
flash_factors_init      Initialize flash factors at specified values
flash_factors_remove    Remove factors from a flash object
flash_factors_reorder   Reorder factors in a flash object
flash_factors_set_to_zero
                        Set flash factors to zero
flash_factors_unfix     Unfix flash factors
flash_fit               Extract a flash_fit object
flash_greedy            Greedily add factors to a flash object
flash_greedy_init_default
                        Initialize a flash factor
flash_greedy_init_irlba
                        Initialize a flash factor using IRLBA
flash_greedy_init_softImpute
                        Initialize a flash factor using softImpute
flash_init              Initialize flash object
flash_nullcheck         Nullcheck flash factors
flash_set_conv_crit     Set convergence criterion and tolerance
                        parameter
flash_set_timeout       Set timeout
flash_set_verbose       Set verbose output
flash_verbose_elbo      Display the current ELBO
flash_verbose_elbo_diff
                        Display the difference in ELBO
flash_verbose_max_chg   Display the maximum difference in scaled
                        loadings and factors
flash_verbose_max_chg_F
                        Display the maximum difference in scaled
                        factors
flash_verbose_max_chg_L
                        Display the maximum difference in scaled
                        loadings
gtex                    GTEx data
gtex_colors             Colors for plotting GTEx data
ldf                     LDF method for flash and flash fit objects
plot.flash              Plot method for flash objects
residuals.flash         Residuals method for flash objects
residuals.flash_fit     Residuals method for flash fit objects
