Package: htrSPRanalysis
Type: Package
Title: Analysis of Surface Plasmon Resonance Data
Version: 0.1.0
Authors@R: c(person("Janice McCarthy", "Developer", role = c("aut", "cre","cph"),email = "janice.mccarthy@duke.edu"),person("Kan Li", "Dev", role = "aut"),person("S. Moses Dennison", role = "aut"),person("Georgia D. Tomaras", role = "aut"))
Description: Analysis of Surface Plasmon Resonance (SPR) and Biolayer Interferometry data, with automations for high-throughput SPR. This version of the package fits the 1: 1 binding model, with and without bulkshift. It offers optional local or global Rmax fitting. The user must provide a sample sheet and a Carterra output file in Carterra's current format. There is a utility function to convert from Carterra's old output format. The user may run a custom pipeline or use the provided 'Runscript', which will produce a pdf file containing fitted Rmax, ka, kd and standard errors, a plot of the sensorgram and fits, and a plot of residuals. The script will also produce a .csv file with all of the relevant parameters for each spot on the SPR chip.
License: GPL (>= 3)
Encoding: UTF-8
RoxygenNote: 7.3.2
Suggests: knitr, rmarkdown, markdown, qpdf
Imports: magrittr, readxl, openxlsx, minpack.lm, zoo, stats, gridExtra,
        grid, parallel, readr, rlang, dplyr, stringr, tidyselect,
        ggplot2, purrr, forcats, tibble, tidyr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2024-08-20 20:42:26 UTC; janice
Author: Janice McCarthy Developer [aut, cre, cph],
  Kan Li Dev [aut],
  S. Moses Dennison [aut],
  Georgia D. Tomaras [aut]
Maintainer: Janice McCarthy Developer <janice.mccarthy@duke.edu>
Repository: CRAN
Date/Publication: 2024-08-26 15:50:06 UTC
Built: R 4.4.3; ; 2025-11-01 04:46:59 UTC; windows
