.libPaths2	librarypath
addPkg	addPkg
addPkg,PkgManifest	addPkg
addPkg,PkgManifest-method	addPkg
addPkg,SessionManifest	addPkg
addPkg,SessionManifest-method	addPkg
archive_retries	archive_retries
archive_retries,SwitchrParam	archive_retries
archive_retries,SwitchrParam-method	archive_retries
archive_retries<-	archive_retries
archive_retries<-,SwitchrParam	archive_retries
archive_retries<-,SwitchrParam-method	archive_retries
archive_timing	archive_timing
archive_timing,SwitchrParam	archive_timing
archive_timing,SwitchrParam-method	archive_timing
archive_timing<-	archive_timing
archive_timing<-,SwitchrParam	archive_timing
archive_timing<-,SwitchrParam-method	archive_timing
BiocDevel	BiocDevel
BiocRelease	BiocRelease
biocReposForVers	biocReposForVers
BiocSource-class	PkgSource-class
BiocSVNManifest	BiocSVNManifest
BiocVers	BiocVers
branch	branch
branch,PkgSource	branch
branch,PkgSource-method	branch
branch<-	branch
branch<-,PkgSource	branch
branch<-,PkgSource-method	branch
c,PkgManifest-method	cmethods
c,SessionManifest-method	cmethods
checkIsPkgDir	checkIsPkgDir
cranPkgVersManifest	cranPkgVersManifest
CRANSource-class	PkgSource-class
currentCompEnv	currentCompEnv
CVSSource-class	PkgSource-class
defaultRepos	defaultRepos
dep_repos	dep_repos
dep_repos,PkgManifest	dep_repos
dep_repos,PkgManifest-method	dep_repos
dep_repos,SessionManifest	dep_repos
dep_repos,SessionManifest-method	dep_repos
dep_repos<-	dep_repos
dep_repos<-,PkgManifest	dep_repos
dep_repos<-,PkgManifest-method	dep_repos
dep_repos<-,SessionManifest	dep_repos
dep_repos<-,SessionManifest-method	dep_repos
dl_method	dl_method
dl_method,SwitchrParam	dl_method
dl_method,SwitchrParam-method	dl_method
dl_method<-	dl_method
dl_method<-,SwitchrParam	dl_method
dl_method<-,SwitchrParam-method	dl_method
errorOrNonZero	errorOrNonZero
fileFromFileURL	fileFromFileURL
findNewestPkgInds	findnewestpkg
findNewestPkgRows	findnewestpkg
findPkgDir	findPkgDir
findPkgVersionInRepo	findPkgVersionInRepo
findPkgVersionInRepo,character	findPkgVersionInRepo
findPkgVersionInRepo,character-method	findPkgVersionInRepo
findPkgVersionInRepo,NULL	findPkgVersionInRepo
findPkgVersionInRepo,NULL-method	findPkgVersionInRepo
flushSession	flushSession
full_libpaths	full_libpaths
full_libpaths,SwitchrCtx	full_libpaths
full_libpaths,SwitchrCtx-method	full_libpaths
getPkgDir	getPkgDir
GithubManifest	GithubManifest
GithubSource-class	PkgSource-class
GitSource-class	PkgSource-class
gotoVersCommit	gotoVersCommit
gotoVersCommit,character,BiocSource	gotoVersCommit
gotoVersCommit,character,BiocSource-method	gotoVersCommit
gotoVersCommit,character,CRANSource	gotoVersCommit
gotoVersCommit,character,CRANSource-method	gotoVersCommit
gotoVersCommit,character,GitSource	gotoVersCommit
gotoVersCommit,character,GitSource-method	gotoVersCommit
gotoVersCommit,character,SVNSource	gotoVersCommit
gotoVersCommit,character,SVNSource-method	gotoVersCommit
graceful_inet	internal
head	headtail
head,PkgManifest	headtail
head,PkgManifest-method	headtail
head,SessionManifest	headtail
head,SessionManifest-method	headtail
install_packages	install
install_packages,character,character	install
install_packages,character,character-method	install
install_packages,character,missing	install
install_packages,character,missing-method	install
install_packages,character,PkgManifest	install
install_packages,character,PkgManifest-method	install
install_packages,character,SessionManifest	install
install_packages,character,SessionManifest-method	install
install_packages,SessionManifest,ANY	install
install_packages,SessionManifest,ANY-method	install
lazyRepo	lazyRepo
lazyRepo,character,PkgManifest	lazyRepo
lazyRepo,character,PkgManifest-method	lazyRepo
lazyRepo,character,SessionManifest	lazyRepo
lazyRepo,character,SessionManifest-method	lazyRepo
lazyRepo,PkgManifest,ANY	lazyRepo
lazyRepo,PkgManifest,ANY-method	lazyRepo
lazyRepo,SessionManifest,ANY	lazyRepo
lazyRepo,SessionManifest,ANY-method	lazyRepo
libManifest	libManifest
libManifest,character	libManifest
libManifest,character-method	libManifest
libManifest,missing	libManifest
libManifest,missing-method	libManifest
libManifest,SwitchrCtx	libManifest
libManifest,SwitchrCtx-method	libManifest
library_paths	library_paths
library_paths,SwitchrCtx	library_paths
library_paths,SwitchrCtx-method	library_paths
loadGRAN	loadGRAN
loadManifest	loadManifest
LocalSource-class	PkgSource-class
locatePkgVersion	locatePkgVersion
location	location-methods
location,PkgSource-method	location-methods
logfun	logfun
logfun,SwitchrParam	logfun
logfun,SwitchrParam-method	logfun
logfun<-	logfun
logfun<-,SwitchrParam	logfun
logfun<-,SwitchrParam-method	logfun
makeBiocSVNURL	makeBiocSVNURL
makeFileURL	makeFileURL
makeLibraryCtx	makeLibraryCtx
makeManifest	makeManifest
makePkgCheckout	makePkgCheckout
makePkgDir	makePkgDir
makePkgDir,ANY,ANY	makePkgDir
makePkgDir,ANY,ANY-method	makePkgDir
makePkgDir,ANY,BiocSource	makePkgDir
makePkgDir,ANY,BiocSource-method	makePkgDir
makePkgDir,ANY,CRANSource	makePkgDir
makePkgDir,ANY,CRANSource-method	makePkgDir
makePkgDir,ANY,GithubSource	makePkgDir
makePkgDir,ANY,GithubSource-method	makePkgDir
makePkgDir,ANY,GitSource	makePkgDir
makePkgDir,ANY,GitSource-method	makePkgDir
makePkgDir,ANY,LocalSource	makePkgDir
makePkgDir,ANY,LocalSource-method	makePkgDir
makePkgDir,ANY,SVNSource	makePkgDir
makePkgDir,ANY,SVNSource-method	makePkgDir
makePkgDir,ANY,TarballSource	makePkgDir
makePkgDir,ANY,TarballSource-method	makePkgDir
makeSeedMan	makeSeedMan
makeSeedMan,data.frame	makeSeedMan
makeSeedMan,data.frame-method	makeSeedMan
makeSeedMan,missing	makeSeedMan
makeSeedMan,missing-method	makeSeedMan
makeSeedMan,parsedSessionInfo	makeSeedMan
makeSeedMan,parsedSessionInfo-method	makeSeedMan
makeSeedMan,sessionInfo	makeSeedMan
makeSeedMan,sessionInfo-method	makeSeedMan
makeSource	makeSource
manifest	manifest_methods
manifest,SessionManifest	manifest_methods
manifest,SessionManifest-method	manifest_methods
manifest<-	manifest_methods
manifest<-,SessionManifest	manifest_methods
manifest<-,SessionManifest-method	manifest_methods
manifestFromCheckoutDir	manifestFromCheckoutDir
ManifestRow	ManifestRow
manifest_df	manifest_df
manifest_df,PkgManifest	manifest_df
manifest_df,PkgManifest-method	manifest_df
manifest_df,SessionManifest	manifest_df
manifest_df,SessionManifest-method	manifest_df
manifest_df<-	manifest_df
manifest_df<-,PkgManifest	manifest_df
manifest_df<-,PkgManifest-method	manifest_df
manifest_df<-,SessionManifest	manifest_df
manifest_df<-,SessionManifest-method	manifest_df
normalizePath2	normalizePath2
notrack	notrack
notrack,NULL	notrack
notrack,NULL-method	notrack
nrow	nrow
nrow,PkgManifest	nrow
nrow,PkgManifest-method	nrow
nrow,SessionManifest	nrow
nrow,SessionManifest-method	nrow
packages	packages
packages,SwitchrCtx	packages
packages,SwitchrCtx-method	packages
parsedSessionInfo-class	parsedSessionInfo-class
parseSessionInfoString	parseSessionInfoString
PkgManifest	PkgManifest
PkgManifest-class	PkgManifest
pkgname	pkgname
pkgname,PkgSource	pkgname
pkgname,PkgSource-method	pkgname
pkgname<-	pkgname
pkgname<-,PkgSource	pkgname
pkgname<-,PkgSource-method	pkgname
PkgSource-class	PkgSource-class
publishManifest	publishManifest
publishManifest,missing,ANY	publishManifest
publishManifest,missing,ANY-method	publishManifest
publishManifest,PkgManifest,character	publishManifest
publishManifest,PkgManifest,character-method	publishManifest
publishManifest,SessionManifest,character	publishManifest
publishManifest,SessionManifest,character-method	publishManifest
publishManifest,SwitchrCtx,ANY	publishManifest
publishManifest,SwitchrCtx,ANY-method	publishManifest
removeLib	removeLib
RepoSubset	RepoSubset
RepoSubset-class	RepoSubset
rVersionManifest	rVersionManifest
SessionManifest	SessionManifest
SessionManifest-class	SessionManifest
shell_timing	shell_timing
shell_timing,SwitchrParam	shell_timing
shell_timing,SwitchrParam-method	shell_timing
shell_timing<-	shell_timing
shell_timing<-,SwitchrParam	shell_timing
shell_timing<-,SwitchrParam-method	shell_timing
sh_init_script	sh_init
sh_init_script,SwitchrParam	sh_init
sh_init_script,SwitchrParam-method	sh_init
sh_init_script<-	sh_init
sh_init_script<-,SwitchrParam,ANY	sh_init
sh_init_script<-,SwitchrParam-method	sh_init
subdir	subdir
subdir,PkgSource	subdir
subdir,PkgSource-method	subdir
subdir<-	subdir
subdir<-,PkgSource	subdir
subdir<-,PkgSource-method	subdir
SVNSource-class	PkgSource-class
switchBack	switchBack
switchDeps	switchDeps
switchrBaseDir	switchrBaseDir
SwitchrCtx	SwitchrCtx
SwitchrCtx-class	SwitchrCtx
switchrDontUnload	switchrDontUnload
switchrManifest	switchrManifest
switchrNoUnload	switchrNoUnload
SwitchrParam	SwitchrParam
SwitchrParam-class	SwitchrParam
switchTo	switchTo
switchTo,character,character	switchTo
switchTo,character,character-method	switchTo
switchTo,character,missing	switchTo
switchTo,character,missing-method	switchTo
switchTo,character,PkgManifest	switchTo
switchTo,character,PkgManifest-method	switchTo
switchTo,character,RepoSubset	switchTo
switchTo,character,RepoSubset-method	switchTo
switchTo,character,SessionManifest	switchTo
switchTo,character,SessionManifest-method	switchTo
switchTo,character,SwitchrCtx	switchTo
switchTo,character,SwitchrCtx-method	switchTo
switchTo,SwitchrCtx,ANY	switchTo
switchTo,SwitchrCtx,ANY-method	switchTo
system_w_init	system_w_init
tail	headtail
tail,PkgManifest	headtail
tail,PkgManifest-method	headtail
tail,SessionManifest	headtail
tail,SessionManifest-method	headtail
TarballSource-class	PkgSource-class
updateManifest	updateManifest
update_PACKAGES	update_PACKAGES
versions_df	versions
versions_df,SessionManifest	versions
versions_df,SessionManifest-method	versions
versions_df<-	versions
versions_df<-,SessionManifest	versions
versions_df<-,SessionManifest-method	versions
warning2	internal
