bulk_generator          Generate artificial bulk RNA-seq samples based
                        on simulation
celltype_expression     Compute cell type specific gene expression
comparedeg_scatter      Generate a scatter plot comparing two
                        differential expression results
comparegsea_scatter     Generate a scatter plot comparing two gene set
                        enrichment analysis results
compute_metrics         Statistical evaluations of predicted cell
                        proportions
construct_ref           Integration of single-cell/nuclei RNA-seq data
                        as reference
gsea_heatmap            Heatmap to demonstrate enrichment of selected
                        gene-sets
gsea_rwplot             GSEA random-walk plot
gsea_sumplot            Summary plot of gene set enrichment analysis
load_scdata             Load, filter and normalize scRNA-seq/snRNA-seq
                        data
prepare_rnk             Prepare .rnk file for GSEA preranked analysis
prop_barplot            Bar plot of cell type proportions across
                        samples
reformat_gmt            Methods to manipulate .gmt files
run_de                  Differential expression analysis
scaling                 Normalization of gene expression data
scdecon                 Deconvolution of bulk RNA-seq data
transformation          Transformation of gene expression data
