localScore-package	localScore-package
Aeso	Aeso
aeso.data	aeso.data
automatic_analysis	automatic_analysis
CharSequence2ScoreSequence	CharSequence2ScoreSequence
CharSequences2ScoreSequences	CharSequences2ScoreSequences
daudin	daudin
dico	aeso.data
exact_mc	exact_mc
HydroScore	HydroScore
karlin	karlin
karlinMonteCarlo	karlinMonteCarlo
karlinMonteCarlo_double	karlinMonteCarlo
karlin_parameters	karlin
lindley	lindley
loadMatrixFromFile	loadMatrixFromFile
loadScoreFromFile	loadScoreFromFile
localScore	localScore-package
localScoreC	localScoreC
localScoreC_double	localScoreC
localScoreC_int	localScoreC
LongSeq	aeso.data
MarkovParameters	MarkovParameters
maxPartialSumd	maxPartialSumd
mcc	mcc
MidSeq	aeso.data
monteCarlo	monteCarlo
monteCarlo_double	monteCarlo
MySeqList	aeso.data
proba_theoretical_first_excursion_iid	proba_theoretical_first_excursion_iid
proba_theoretical_ith_excursion_iid	proba_theoretical_ith_excursion_iid
proba_theoretical_ith_excursion_markov	proba_theoretical_ith_excursion_markov
RealScores2IntegerScores	RealScores2IntegerScores
recordTimes	recordTimes
scoreSequences2probabilityVector	scoreSequences2probabilityVector
Seq1093	Seq1093
Seq219	Seq219
Seq31	Seq31
SeqListSCOPe	SeqListSCOPe
sequences2transmatrix	sequences2transmatrix
ShortSeq	aeso.data
SJSyndrome	SJSyndrome
SJSyndrome.data	aeso.data
stationary_distribution	stationary_distribution
transmatrix2sequence	transmatrix2sequence
