HTRX: Haplotype Trend Regression with eXtra Flexibility (HTRX)

Detection of haplotype patterns that include single nucleotide polymorphisms (SNPs) and non-contiguous haplotypes that are associated with a phenotype. Methods for implementing HTRX are described in Yang Y, Lawson DJ (2023) <doi:10.1093/bioadv/vbad038> and Barrie W, Yang Y, Irving-Pease E.K, et al (2024) <doi:10.1038/s41586-023-06618-z>.

Version: 1.2.4
Depends: R (≥ 4.0.0)
Imports: fastglm, caret, parallel, methods, stats, glmnet, tune, recipes
Suggests: knitr, rmarkdown
Published: 2024-02-09
DOI: 10.32614/CRAN.package.HTRX
Author: Yaoling Yang ORCID iD [aut, cre], Daniel Lawson ORCID iD [aut]
Maintainer: Yaoling Yang <yaoling.yang at bristol.ac.uk>
License: GPL-3
NeedsCompilation: no
Materials: README
CRAN checks: HTRX results

Documentation:

Reference manual: HTRX.html , HTRX.pdf
Vignettes: HTRX_vignette (source, R code)

Downloads:

Package source: HTRX_1.2.4.tar.gz
Windows binaries: r-devel: HTRX_1.2.4.zip, r-release: HTRX_1.2.4.zip, r-oldrel: HTRX_1.2.4.zip
macOS binaries: r-release (arm64): HTRX_1.2.4.tgz, r-oldrel (arm64): HTRX_1.2.4.tgz, r-release (x86_64): HTRX_1.2.4.tgz, r-oldrel (x86_64): HTRX_1.2.4.tgz
Old sources: HTRX archive

Linking:

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