A simple, one-command package which runs an interactive dashboard capable of common visualizations for single cell RNA-seq. 'SeuratExplorer' requires a processed 'Seurat' object, which is saved as 'rds' or 'qs2' file.
| Version: |
0.1.0 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
ggplot2, utils, Seurat, shiny, shinydashboard, DT, shinycssloaders, patchwork, tools, colourpicker, shinyWidgets, scales, SeuratObject, shinyjqui, shinyBS, ggalluvial, dplyr, ComplexHeatmap, qs2, circlize, reshape2, stats, htmltools |
| Suggests: |
BiocManager, DESeq2, MAST, roxygen2, devtools |
| Published: |
2025-03-13 |
| DOI: |
10.32614/CRAN.package.SeuratExplorer |
| Author: |
Yongchao Zhang [aut, cre] (https://github.com/fentouxungui) |
| Maintainer: |
Yongchao Zhang <zhangyongchao at nibs.ac.cn> |
| License: |
GPL (≥ 3) |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
SeuratExplorer results |