Package: CaMutQC
Type: Package
Title: An R Package for Comprehensive Filtration and Selection of
        Cancer Somatic Mutations
Version: 1.4.3
Authors@R: c(person(given = "Xin", family = "Wang", 
                     role = c("aut", "cre"),
                     email = "sylviawang555@gmail.com",
                     comment = c(ORCID = "0000-0002-6072-599X")))
Description: CaMutQC is able to filter false positive mutations generated due to 
    technical issues, as well as to select candidate cancer mutations through a 
    series of well-structured functions by labeling mutations with various flags.
    And a detailed and vivid filter report will be offered after completing 
    a whole filtration or selection section. Also, CaMutQC integrates serveral 
    methods and gene panels for Tumor Mutational Burden (TMB) estimation.  
biocViews: Software, QualityControl, GeneTarget
Encoding: UTF-8
Suggests: knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
RoxygenNote: 7.3.1
NeedsCompilation: no
BugReports: https://github.com/likelet/CaMutQC/issues
URL: https://github.com/likelet/CaMutQC
Depends: R (>= 4.0.0)
Imports: ggplot2, dplyr, org.Hs.eg.db, vcfR, clusterProfiler, stringr,
        DT, MesKit, maftools, data.table, utils, stats, methods, tidyr
License: GPL-3
git_url: https://git.bioconductor.org/packages/CaMutQC
git_branch: RELEASE_3_21
git_last_commit: 4d03132
git_last_commit_date: 2025-06-25
Repository: Bioconductor 3.21
Date/Publication: 2025-06-26
Packaged: 2025-06-26 21:53:23 UTC; biocbuild
Author: Xin Wang [aut, cre] (ORCID: <https://orcid.org/0000-0002-6072-599X>)
Maintainer: Xin Wang <sylviawang555@gmail.com>
Built: R 4.5.1; ; 2025-06-27 12:43:38 UTC; windows
