| bods | Common gene set data collections | 
| carta.gs | Common gene set data collections | 
| eg2sym | Conversion between Entrez Gene IDs and official gene symbols for human genes. | 
| egSymb | Mapping between Entrez Gene IDs and official symbols | 
| esset.grp | The non-redundant signcant gene set list | 
| essGene | Essential member genes in a gene set | 
| gage | GAGE (Generally Applicable Gene-set Enrichment) analysis | 
| gageComp | Compare multiple GAGE analyses results | 
| gagePipe | GAGE analysis pipeline | 
| gagePrep | GAGE (Generally Applicable Gene-set Enrichment) analysis | 
| gageSum | GAGE (Generally Applicable Gene-set Enrichment) analysis | 
| geneData | View the expression data for selected genes | 
| go.gs | Common gene set data collections | 
| go.gsets | Generate up-to-date GO (Gene Ontology) gene sets | 
| gs.KSTest | Gene set differential expression test | 
| gs.tTest | Gene set differential expression test | 
| gs.zTest | Gene set differential expression test | 
| gse16873 | GSE16873: a breast cancer microarray dataset | 
| heter.gage | GAGE analysis for heterogeneous data | 
| kegg.gs | Common gene set data collections | 
| kegg.gs.dise | Common gene set data collections | 
| kegg.gsets | Generate up-to-date KEGG pathway gene sets | 
| khier | Common gene set data collections | 
| korg | Common gene set data collections | 
| pairData | GAGE analysis for heterogeneous data | 
| readExpData | Read in expression data | 
| readList | Read in gene set data as a named list | 
| sigGeneSet | Significant gene set from GAGE analysis | 
| sym2eg | Conversion between Entrez Gene IDs and official gene symbols for human genes. |