DASC
This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see DASC.
Detecting hidden batch factors through data adaptive adjustment for biological effects
Bioconductor version: 3.6
The package is used for identifying batches in high-dimensional dataset.
Author: Haidong Yi, Ayush T. Raman
Maintainer: Haidong Yi <982869874 at qq.com>
Citation (from within R, enter
citation("DASC")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DASC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DASC")| DASC user guide | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | BatchEffect, Clustering, GeneExpression, GeneTarget, Normalization, Preprocessing, QualityControl, RNASeq, Software, StatisticalMethod |
| Version | 0.99.11 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.4.0) |
| Imports | NMF (>= 0.20.6), cvxclustr (>= 1.1.1), Biobase |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown, DESeq2, pcaExplorer, testthat, ggplot2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DASC_0.99.11.tar.gz |
| Windows Binary | DASC_1.0.0.zip |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/DASC |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DASC |
| Package Short Url | https://bioconductor.org/packages/DASC/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |