GenomicDataCommons
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see GenomicDataCommons.
NIH / NCI Genomic Data Commons Access
Bioconductor version: 3.6
Programmatically access the NIH / NCI Genomic Data Commons RESTful service.
Author: Martin Morgan [aut], Davis Sean [aut, cre]
Maintainer: Davis Sean <sdavis2 at mail.nih.gov>
Citation (from within R, enter
citation("GenomicDataCommons")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GenomicDataCommons")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DataImport, Sequencing, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4.0), magrittr |
| Imports | stats, httr, xml2, jsonlite, utils, lazyeval, readr, data.table, GenomicRanges, IRanges |
| System Requirements | |
| URL | https://bioconductor.org/packages/GenomicDataCommons http://github.com/Bioconductor/GenomicDataCommons |
| Bug Reports | https://github.com/Bioconductor/GenomicDataCommons/issues/new |
See More
| Suggests | BiocStyle, knitr, rmarkdown, DT, testthat, listviewer, ggplot2, GenomicAlignments, Rsamtools |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GenomicDataCommons_1.2.0.tar.gz |
| Windows Binary | GenomicDataCommons_1.2.0.zip |
| Mac OS X 10.11 (El Capitan) | GenomicDataCommons_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GenomicDataCommons |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GenomicDataCommons |
| Package Short Url | https://bioconductor.org/packages/GenomicDataCommons/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |