ProCoNA

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ProCoNA.

Protein co-expression network analysis (ProCoNA).


Bioconductor version: 3.6

Protein co-expression network construction using peptide level data, with statisical analysis. (Journal of Clinical Bioinformatics 2013, 3:11 doi:10.1186/2043-9113-3-11)

Author: David L Gibbs

Maintainer: David L Gibbs <gibbsd at ohsu.edu>

Citation (from within R, enter citation("ProCoNA")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ProCoNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ProCoNA")
De Novo Peptide Network Example PDF R Script
Reference Manual PDF
README Text
NEWS Text

Details

biocViews GraphAndNetwork, Proteomics, Software
Version 1.16.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL (>= 2)
Depends R (>= 2.10), methods, WGCNA, MSnbase, flashClust
Imports BiocGenerics, GOstats
System Requirements
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Suggests RUnit
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Depends On Me
Imports Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ProCoNA_1.16.0.tar.gz
Windows Binary ProCoNA_1.16.0.zip
Mac OS X 10.11 (El Capitan) ProCoNA_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ProCoNA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ProCoNA
Package Short Url https://bioconductor.org/packages/ProCoNA/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive