eiR

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see eiR.

Accelerated similarity searching of small molecules


Bioconductor version: 3.6

The eiR package provides utilities for accelerated structure similarity searching of very large small molecule data sets using an embedding and indexing approach.

Author: Kevin Horan, Yiqun Cao and Tyler Backman

Maintainer: Thomas Girke <thomas.girke at ucr.edu>

Citation (from within R, enter citation("eiR")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("eiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
NEWS Text
INSTALL Text
LICENSE Text

Details

biocViews BiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization
Version 1.18.0
In Bioconductor since BioC 2.12 (R-3.0) (11 years)
License Artistic-2.0
Depends R (>= 2.10.0), ChemmineR(>= 2.15.15), methods, DBI
Imports snow, tools, snowfall, RUnit, methods, ChemmineR, RCurl, digest, BiocGenerics, gespeR, RcppAnnoy (>= 0.0.9)
System Requirements
URL https://github.com/girke-lab/eiR
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package eiR_1.18.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) eiR_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/eiR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/eiR
Package Short Url https://bioconductor.org/packages/eiR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive