globalSeq

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see globalSeq.

Testing for association between RNA-Seq and high-dimensional data


Bioconductor version: 3.6

The method may be conceptualised as a test of overall significance in regression analysis, where the response variable is overdispersed and the number of explanatory variables exceeds the sample size.

Author: Armin Rauschenberger [aut, cre]

Maintainer: Armin Rauschenberger <a.rauschenberger at vumc.nl>

Citation (from within R, enter citation("globalSeq")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("globalSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("globalSeq")
globalSeq PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, DimensionReduction, ExomeSeq, ExonArray, GeneExpression, GenomeWideAssociation, MultipleComparison, RNASeq, Regression, Sequencing, Software, Transcriptomics, WholeGenome, miRNA
Version 1.6.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL-3
Depends R (>= 3.0.0)
Imports
System Requirements
URL https://github.com/rauschenberger/globalSeq
Bug Reports https://github.com/rauschenberger/globalSeq/issues
See More
Suggests knitr, testthat, SummarizedExperiment
Linking To
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Depends On Me
Imports Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package globalSeq_1.6.0.tar.gz
Windows Binary globalSeq_1.6.0.zip
Mac OS X 10.11 (El Capitan) globalSeq_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/globalSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/globalSeq
Package Short Url https://bioconductor.org/packages/globalSeq/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.6 Source Archive