oneChannelGUI
This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see oneChannelGUI.
A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops
Bioconductor version: 3.6
This package was developed to simplify the use of Bioconductor tools for beginners having limited or no experience in writing R code. This library provides a graphical interface for microarray gene and exon level analysis as well as miRNA/mRNA-seq data analysis
Author: Raffale A Calogero, Bioinformatics and Genomics Unit, Molecular Biotechnology Center, Torino (Italy)
Maintainer: Raffaele A Calogero <raffaele.calogero at unito.it>
citation("oneChannelGUI")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("oneChannelGUI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("oneChannelGUI")| oneChannelGUI Installation | R Script | |
| oneChannelGUI microarray exon-level data analysis overview | ||
| oneChannelGUI microarray gene-level data analysis overview | ||
| oneChannelGUI miRNA and RNA-seq data analysis overview | ||
| oneChannelGUI Stand Alone Functions | ||
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, DifferentialExpression, GUI, Microarray, MultipleComparison, OneChannel, Preprocessing, QualityControl, RNASeq, Sequencing, Software, StatisticalMethod |
| Version | 1.41.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (17 years) |
| License | Artistic-2.0 |
| Depends | Biobase, affylmGUI, tkrplot, tkWidgets, IRanges, Rsamtools(>= 1.13.1), Biostrings, siggenes, chimera |
| Imports | |
| System Requirements | |
| URL | http://www.bioinformatica.unito.it/oneChannelGUI/ |
See More
| Suggests | annotate, genefilter, maSigPro, pamr, pdmclass, ChIPpeakAnno, chipseq, BSgenome, Rgraphviz, affy, annaffy, affyPLM, multtest, ssize, sizepower, RankProd, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, edgeR, metaArray, MergeMaid, biomaRt, GenomeGraphs, AffyCompatible, rtracklayer, Genominator, EDASeq, limma, DESeq, DEXSeq, goseq, hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db, ragene10sttranscriptcluster.db, GOstats, AnnotationDbi, preprocessCore, baySeq, HuExExonProbesetLocation, MoExExonProbesetLocation, RaExExonProbesetLocation, snow, RmiR, RmiR.Hs.miRNA, BSgenome.Hsapiens.UCSC.hg19, R.utils, cummeRbund, BSgenome.Mmusculus.UCSC.mm9, BSgenome.Rnorvegicus.UCSC.rn4, DESeq2, GenomicAlignments, BiocParallel, KEGG.db, miRNApath, miRNAtap, miRNAtap.db |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | oneChannelGUI_1.41.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | oneChannelGUI_1.43.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/oneChannelGUI |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/oneChannelGUI |
| Package Short Url | https://bioconductor.org/packages/oneChannelGUI/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |