Rgraphviz
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see Rgraphviz.
Provides plotting capabilities for R graph objects
Bioconductor version: 3.9
Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package.
Author: Kasper Daniel Hansen [cre, aut], Jeff Gentry [aut], Li Long [aut], Robert Gentleman [aut], Seth Falcon [aut], Florian Hahne [aut], Deepayan Sarkar [aut]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
citation("Rgraphviz")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rgraphviz")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rgraphviz")| A New Interface to Plot Graphs Using Rgraphviz | R Script | |
| How To Plot A Graph Using Rgraphviz | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GraphAndNetwork, Software, Visualization |
| Version | 2.28.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | EPL |
| Depends | R (>= 2.6.0), methods, utils, graph, grid |
| Imports | stats4, graphics, grDevices |
| System Requirements | optionally Graphviz (>= 2.16) |
| URL |
See More
| Suggests | RUnit, BiocGenerics, XML |
| Linking To | |
| Enhances | |
| Depends On Me | biocGraph, BioMVCClass, CellNOptR, flowCL, flowMerge, GOFunction, maEndToEnd, MineICA, netresponse, paircompviz, pathRender, ROntoTools, SplicingGraphs, TDARACNE |
| Imports Me | apComplex, biocGraph, chimeraviz, CompGO, CytoML, DEGraph, EnrichmentBrowser, flowWorkspace, GeneNetworkBuilder, GOFunction, GOstats, hyperdraw, MIGSA, mirIntegrator, mnem, nem, OncoSimulR, ontoProc, paircompviz, pathview, Pigengene, qpgraph, RchyOptimyx, SplicingGraphs, trackViewer, TRONCO |
| Suggests Me | altcdfenvs, annotate, BiocCaseStudies, Category, CNORfeeder, CNORfuzzy, DEGraph, flowCore, geneplotter, GlobalAncova, globaltest, GSEABase, KEGGgraph, MLP, NCIgraph, NCIgraphData, pcaGoPromoter, pkgDepTools, RBGL, RBioinf, rBiopaxParser, RDAVIDWebService, RpsiXML, Rtreemix, safe, SNAData, SPIA, SRAdb, Streamer, topGO, vtpnet |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Rgraphviz_2.28.0.tar.gz |
| Windows Binary | Rgraphviz_2.28.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | Rgraphviz_2.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rgraphviz |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rgraphviz |
| Bioc Package Browser | https://code.bioconductor.org/browse/Rgraphviz/ |
| Package Short Url | https://bioconductor.org/packages/Rgraphviz/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |