SANTA
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SANTA.
Spatial Analysis of Network Associations
Bioconductor version: 3.9
This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).
Author: Alex J. Cornish and Florian Markowetz
Maintainer: Alex J. Cornish <a.cornish12 at imperial.ac.uk>
citation("SANTA")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SANTA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SANTA")| Introduction to SANTA | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, Network, NetworkEnrichment, Software |
| Version | 2.22.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (11 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.14), igraph |
| Imports | Matrix, snow |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, BiocGenerics, knitr, knitcitations, formatR, org.Sc.sgd.db, BioNet, DLBCL, msm |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SANTA_2.22.0.tar.gz |
| Windows Binary | SANTA_2.22.0.zip |
| Mac OS X 10.11 (El Capitan) | SANTA_2.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/SANTA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SANTA |
| Bioc Package Browser | https://code.bioconductor.org/browse/SANTA/ |
| Package Short Url | https://bioconductor.org/packages/SANTA/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |