Package: BloodGen3Module
Type: Package
Title: This R package for performing module repertoire analyses and
        generating fingerprint representations
Version: 1.19.0
Date: 2020-11-05
Authors@R: 
    person(given = "Darawan",
           family = "Rinchai",
           role = c("aut", "cre"),
           email = "drinchai@gmail.com",
           comment = c(ORCID = "0000-0001-8851-7730"))
Description: The BloodGen3Module package provides functions for R user
        performing module repertoire analyses and generating
        fingerprint representations. Functions can perform group
        comparison or individual sample analysis and visualization by
        fingerprint grid plot or fingerprint heatmap. Module repertoire
        analyses typically involve determining the percentage of the
        constitutive genes for each module that are significantly
        increased or decreased. As we describe in
        details;https://www.biorxiv.org/content/10.1101/525709v2 and
        https://pubmed.ncbi.nlm.nih.gov/33624743/, the results of
        module repertoire analyses can be represented in a fingerprint
        format, where red and blue spots indicate increases or
        decreases in module activity. These spots are subsequently
        represented either on a grid, with each position being assigned
        to a given module, or in a heatmap where the samples are
        arranged in columns and the modules in rows.
Depends: R (>= 4.1)
License: GPL-2
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
Imports: SummarizedExperiment, ExperimentHub, methods, grid, graphics,
        stats, grDevices, circlize, testthat, ComplexHeatmap(>=
        1.99.8), ggplot2, matrixStats, gtools, reshape2,
        preprocessCore, randomcoloR, V8, limma
biocViews: Software, Visualization, GeneExpression
Suggests: RUnit, devtools, BiocGenerics, knitr, rmarkdown
VignetteBuilder: knitr
Config/pak/sysreqs: make libicu-dev libpng-dev libssl-dev perl
        libnode-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:09:33 UTC
RemoteUrl: https://github.com/bioc/BloodGen3Module
RemoteRef: HEAD
RemoteSha: 825e116a9a4239495aa95fc1004245a4a13a277e
NeedsCompilation: no
Packaged: 2025-11-02 14:42:25 UTC; root
Author: Darawan Rinchai [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-8851-7730>)
Maintainer: Darawan Rinchai <drinchai@gmail.com>
Built: R 4.6.0; ; 2025-11-02 14:44:58 UTC; windows
