Package: CSAR
Type: Package
Title: Statistical tools for the analysis of ChIP-seq data
Version: 1.63.0
Date: 2025-07-24
Author: Jose M Muino
Description: Statistical tools for ChIP-seq data analysis. The package
        includes the statistical method described in Kaufmann et al.
        (2009) PLoS Biology: 7(4):e1000090. Briefly, Taking the average
        DNA fragment size subjected to sequencing into account, the
        software calculates genomic single-nucleotide read-enrichment
        values. After normalization, sample and control are compared
        using a test based on the Poisson distribution. Test statistic
        thresholds to control the false discovery rate are obtained
        through random permutation.
Depends: R (>= 2.15.0), S4Vectors, IRanges, Seqinfo, GenomicRanges
Maintainer: Jose M Muino <jose.muino@live.com>
Suggests: ShortRead, Biostrings
Imports: stats, utils
License: Artistic-2.0
LazyLoad: yes
LazyData: yes
biocViews: ChIPSeq, Transcription, Genetics
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:04:05 UTC
RemoteUrl: https://github.com/bioc/CSAR
RemoteRef: HEAD
RemoteSha: 3494fdf127f90063c676a2c09601d0fe6acfdcc5
NeedsCompilation: yes
Packaged: 2025-11-02 14:45:50 UTC; root
Built: R 4.6.0; x86_64-w64-mingw32; 2025-11-02 14:47:51 UTC; windows
Archs: x64
