ece5aa136bbe070b522d7a81b4e1fcb9 *CITATION
d87f84831518b9e50d98098a90f46d35 *DESCRIPTION
536fba749e5576383ea9e9afd8b4a200 *INDEX
3116dcb4c3ba3604d5700ef713b6a6ae *Meta/Rd.rds
50a9fa3e1aa2c47fa7bdbd6e6bb8974e *Meta/features.rds
56700dd6a6d6ee8979b9f216bb5f8724 *Meta/hsearch.rds
022e59401896778748f38fa2c0eaeacd *Meta/links.rds
f93e1bff4f28b214dba8242a35b5255d *Meta/nsInfo.rds
d331c1458eb709658abe466c90e4e508 *Meta/package.rds
0f5cf71b64355ee17ff3d01a66e86a5b *Meta/vignette.rds
bc087b66297c756db91efdc52f3fcb66 *NAMESPACE
b3b8446dca41caba72813a39c5e8469d *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/LACHESIS
49f6e3b1be2a9fbe8ce0c46a83df7639 *R/LACHESIS.rdb
6536cd531608942904080039184c2799 *R/LACHESIS.rdx
be0c3cd3b5946279b93543e74b82ba67 *doc/index.html
4dc8d734099d0cab94b274592981d6c1 *doc/vignette_LACHESIS.R
2c3be8f7cdc8e2b47f94add0c0890bc8 *doc/vignette_LACHESIS.Rmd
e63ab740728c4e78655ba4e1c06f6b72 *doc/vignette_LACHESIS.html
94d2629d85dd4ad90b5186bc2a9f8f04 *extdata/ACESeq/NBE11_comb_pro_extra2.59_0.83.txt
8b994519d2411f18b60adfd26acbf89b *extdata/ASCAT/S98.segments.txt
6a5c22d360848b10022912c2afdc75f7 *extdata/LACHESIS_package_structure.png
94d2629d85dd4ad90b5186bc2a9f8f04 *extdata/NBE11/NBE11_comb_pro_extra2.59_0.83.txt
f2c857419ed7f5dbbffb0d8bf49a3e66 *extdata/NBE11/snvs_NBE11_somatic_snvs_conf_8_to_10.vcf
3fb79b6ea7c72d99a6f70a740c21897a *extdata/NBE15/NBE15_comb_pro_extra2.51_1.txt
cab67f45f44823a375a6dc56fcc6ee09 *extdata/NBE15/snvs_NBE15_somatic_snvs_conf_8_to_10.vcf
8c2861c8ba5fd9684ab865ff57b1a98c *extdata/NBE15_Decomposed_MutationType_Probabilities.txt
797d549a3dbe3e849b6368f107642cd6 *extdata/NBE26/NBE26_comb_pro_extra3.25_0.88.txt
c2404a7f1d0318ca172913d1e81038a0 *extdata/NBE26/snvs_NBE26_somatic_snvs_conf_8_to_10.vcf
c512c56d132731f632c2eb60b9b77315 *extdata/NBE63/NBE63_comb_pro_extra2.3_0.97.txt
a0cbbc83811d5f2f7f5fa3d605c9160f *extdata/NBE63/snvs_NBE63_somatic_snvs_conf_8_to_10.vcf
cbe3b7e8f5b22a068a48b262a0b57b19 *extdata/PURPLE/NB-S-599-T.purple.cnv.somatic.tsv
f4e1e6bf35e79c2e8526ff6ab3e8285d *extdata/Sample_template.txt
e458dac4d633e7813bf0dc172e2d9c6a *extdata/Sample_template.xlsx
2b58edcc8200d7fb15d2e482bb9ed01e *extdata/VAF_negative_example.png
f9d300c19bbd5c5f6f595b7567149049 *extdata/VAF_positive_example.png
f297b6b0a60ba50cff8b7b29e8822a8c *extdata/cancerhotspots_v2_GRCh37_adapted.tsv
d27d41ecfcf573d40f07f0bc3578ccff *extdata/cancerhotspots_v2_GRCh38_adapted.tsv
ea81f3887d05ae2971a537a5705968e7 *extdata/mutect.somatic.vcf.gz
a099dd5544af73fcac562e530cfa78d0 *extdata/mutect.somatic.vcf.gz.csi
12829bd76d98be37c3a2843c89c2b2f8 *extdata/other.vcf
0176ae877742f09b2780db5bdba5134d *extdata/strelka2.somatic.snvs.vcf.gz
f3936b51b11414d93b113331d4893ed5 *extdata/strelka2.somatic.snvs.vcf.gz.csi
ee5e21190cbf88d8f8544ad18b955201 *help/AnIndex
e6d35835c26ed4687be3fa838d6920af *help/LACHESIS.rdb
e6315ad0b70b1b3aecc0c245c4e515e0 *help/LACHESIS.rdx
c97020f50f67d6335ab4ab3e08d0247c *help/aliases.rds
ab40fa55f7990861577a56e3df55ae86 *help/figures/LACHESIS_logo.svg
ba324b2fe726e1faa1eafe3f1c6bca8c *help/paths.rds
c8cf6abb4835fc5c99ef5aaa69ea5b3c *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
2f8f961f8ad62b115ba13dd38c8d198a *intdata/hg19.sizes
83fb1c17d81cedfa9d5bbd663a09b4e2 *intdata/mm10.sizes
645e86ccf2d7dabf731c1b3ec1552b7a *tinytest/test_nbImport.R
1a431e20711554b480050e1b9de3951c *tinytest/test_readCNV.R
2aba5ee4ea9e82469415a25c55803e2a *tinytest/test_readVCF.R
