Changes in version 1.5.2                        

  - Fixed bugs in createEsets.R

                        Changes in version 1.3.2                        

  - Updated all gene maps

                        Changes in version 1.3.1                        

  - Added missing grade to GSE26913
  - Improved order of gene filtering in createEsetList.R

                        Changes in version 1.3.0                        

  - Added datasets: GSE26193, GSE49997, GSE44104, GSE51088
  - Curated debulking status for Mok (GSE18520)
  - Added sample_type classifications
  - Refined platform_accession and metadata column names
  - Upgraded to Ensembl release 76 for gene maps

                        Changes in version 1.2.2                        

  - Added "Non-unique gene symbols" section to vignette
  - Updated createEsetList.R and patient selection config

                        Changes in version 1.2.1                        

  - Fixed curation of TCGA sample type "11"

                        Changes in version 1.2.0                        

  - Added RNA-seq TCGA data
  - Updated gene maps

                        Changes in version 1.1.1                        

  - Added options remove.retracted and remove.subsets to createEsets.R

                        Changes in version 1.1.0                        

  - Added p-values to figure captions
  - Renamed package variants in inst/extdata/*
  - Updated metadata for GSE18520
  - Added GSE8842 (Agilent array)
  - Added DATABASE publication citation

                        Changes in version 1.0.1                        

  - Curated grade for GSE17260

                        Changes in version 1.0.0                        

  - Automated per-dataset documentation
  - Expanded vignette
  - Added missing grade/summarygrade fields
  - Enriched ExpressionSets with metadata
  - Fixed TCGA experiment name typo
  - Fixed featureData in FULLV version

                       Changes in version 0.99.21                       

  - Improved merging logic for technical replicate metadata

                       Changes in version 0.99.20                       

  - Added stromal/tumor/normal cell percentages
  - Added uncurated_author_metadata
  - Removed obsolete metadata fields
  - Renamed metadata fields
  - Defined TCGA optimal debulking as <10mm

                       Changes in version 0.99.10                       

  - Added TCGA-mirna-8x15kv2 and GSE30161

                       Changes in version 0.99.2                        

  - Added tumorstage and summarystage to GSE26712

                       Changes in version 0.99.1                        

  - Fixed expO short title
  - Updated staging system in template
  - Curated stage/grade fields in multiple datasets
  - Added tumorstage to GSE2109
  - Removed curation files for uncurated datasets
  - Fixed stage data in GSE6008
  - Updated BLAST reference genome to GRCh37.68
  - Updated BioMart gene maps
  - Addressed missing publication metadata
  - Made test_counts.R work
  - Handled metadata disagreement in technical replicates
  - Added batch variable to GSE17290060

                        Changes in version 0.5.0                        

  - Disallowed "unknown" in templates; use NA instead
  - Added syntax-checking unit test

                        Changes in version 0.4.2                        

  - Actually included ages for GSE26712

                        Changes in version 0.4.1                        

  - Added ages to GSE26712
  - Used getPlatformsBiomaRt for GSE6822

                        Changes in version 0.4.0                        

  - Added GSE30009 (Taqman qPCR dataset)

                        Changes in version 0.3.0                        

  - Added GSE32062.GPL6480 and GSE32063
  - GSE13876: removed redundant recurrence status
  - Resolved missing ExperimentData for GSE2109 and GSE6822
  - Added subtype information to multiple datasets
  - Converted dataset check test to R CMD check unit test

                        Changes in version 0.2.4                        

  - TCGA: replaced missing batch variable
  - GSE9891: corrected survival data for three patients

                        Changes in version 0.2.3                        

  - Renamed batch variables for consistency
  - Consistently label missing debulking status as NA
  - Replaced missing probesets in FULL version
  - Added unit test for sample counts (not yet functional)

                        Changes in version 0.2.2                        

  - Replace GSE17260, which was missing in 0.2.1

                        Changes in version 0.2.1                        

  - In the TCGA dataset, about 40 censored patients had days_to_death
    and days_to_recurrence labelled as NA instead of follow-up time.
  - TCGA released updated clinical information for six patients
  - Minor changes to GSE18520 based on a review, including updates to
    debulking status, stage, and grade.

                        Changes in version 0.2.0                        

  - Added E-MTAB-386 (FFPE samples with survival data)
  - Put MaxMean probe mappings in eset@featureData
  - Put official Bioconductor platform names in eset@annotation