addLogo                 Add motif logo to RcisTarget results table
addMotifAnnotation      Add motif annotation
addSignificantGenes     Add significant genes
aucScores-class         Class to store the AUC scores for RcisTarget.
calcAUC                 Calculate AUC
cisTarget               cisTarget
convertToTargetRegions
                        convertToTargetRegions
dbRegionsLoc            Genomic location for the database regions
getDbRegionsLoc         Gets the region location for the given database
                        IDs.
getMotifAnnotation      Get motif annotation
importAnnotations       Imports the annotations of motifs to
                        transcription factors
importRankings          Import the motif databases for RcisTarget.
motifAnnotations        Annotations of Motifs to TFs
rankingRcisTarget-class
                        Class to store the motif databases for
                        RcisTarget.
reRank                  Re-rank RcisTarget ranking
showLogo                Show RcisTarget as HTML
