.Binarize	dot-Binarize
.LearnModel	dot-LearnModel
accessors	accessors
annotate_segments	annotate_segments
binarize_bam	binarize_bam
binarize_bed	binarize_bed
bins	accessors
bins,segmentation-method	accessors
cells	accessors
cells,segmentation-method	accessors
class:segmentation	segmentation
compare_models	compare_models
counts	accessors
counts,segmentation-method	accessors
count_reads_ranges	count_reads_ranges
emission	accessors
emission,segmentation-method	accessors
emissions_file	emissions_file
enrichment_files	enrichment_files
get_frequency	get_frequency
get_width	get_width
learn_model	learn_model
likelihood	accessors
likelihood,segmentation-method	accessors
markers	accessors
markers,segmentation-method	accessors
merge_segments_bins	merge_segments_bins
methods	methods
model	accessors
model,segmentation-method	accessors
model_file	model_file
overlap	accessors
overlap,segmentation-method	accessors
overlap_files	overlap_files
plot_heatmap	plot_heatmap
range_bins	range_bins
range_counts	range_counts
read_bam_file	read_bam_file
read_bins_file	read_bins_file
read_cellmark_file	read_cellmark_file
read_chromsize_file	read_chromsize_file
read_emissions_file	read_emissions_file
read_enrichment_file	read_enrichment_file
read_model_file	read_model_file
read_overlap_file	read_overlap_file
read_segements_file	read_segements_file
read_transitions_file	read_transitions_file
segment	accessors
segment,segmentation-method	accessors
segmentation	segmentation
segmentation-class	segmentation
segments_files	segments_files
show,segmentation-method	methods
states	accessors
states,segmentation-method	accessors
TES	accessors
TES,segmentation-method	accessors
test_obj	test_obj
test_objs	test_objs
tidy_ranges	tidy_ranges
transition	accessors
transition,segmentation-method	accessors
transitions_file	transitions_file
TSS	accessors
TSS,segmentation-method	accessors
