spARI
This is the released version of spARI; for the devel version, see spARI.
Spatially Aware Adjusted Rand Index for Evaluating Spatial Transcritpomics Clustering
Bioconductor version: Release (3.22)
The R package used in the manuscript "Spatially Aware Adjusted Rand Index for Evaluating Spatial Transcritpomics Clustering".
Author: Yinqiao Yan [aut, cre], Xiangnan Feng [aut, fnd], Xiangyu Luo [aut, fnd]
Maintainer: Yinqiao Yan <yinqiaoyan at bjut.edu.cn>
Citation (from within R, enter
citation("spARI")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("spARI")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("spARI")| An Introduction to spARI | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, DataImport, GeneExpression, Software, Spatial, Transcriptomics |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.22 (R-4.5) (< 6 months) |
| License | GPL (>= 2) |
| Depends | R (>= 4.1.0) |
| Imports | Rcpp, stats, Matrix, SpatialExperiment, SummarizedExperiment, BiocParallel(>= 1.0) |
| System Requirements | |
| URL |
See More
| Suggests | FNN, knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0) |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | spARI_1.0.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | spARI_1.0.0.tgz |
| macOS Binary (arm64) | spARI_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/spARI |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/spARI |
| Bioc Package Browser | https://code.bioconductor.org/browse/spARI/ |
| Package Short Url | https://bioconductor.org/packages/spARI/ |
| Package Downloads Report | Download Stats |