RDX2 X  reposDF ALL colonCA davidTiling ecoliLeucine estrogen faahKO fibroEset golubEsets Iyer517 SpikeIn yeastCC class AsIsþ  stringRep 1.0.2ÿ VersionNumber package reposToolsþþÿ 1.1.1ÿ VersionNumberÿ reposToolsþþÿ 1.0.0ÿ VersionNumberÿ reposToolsþþÿ 0.1-1ÿ VersionNumberÿ reposToolsþþÿ 1.5.0ÿ VersionNumberÿ reposToolsþþÿ 1.0ÿ VersionNumberÿ reposToolsþþÿ 1.0ÿ VersionNumberÿ reposToolsþþÿ 1.0.1ÿ VersionNumberÿ reposToolsþþÿ 1.0.3ÿ VersionNumberÿ reposToolsþþÿ 1.0.1ÿ VersionNumberÿ reposToolsþþÿ 0.5.1ÿ VersionNumberÿ reposToolsþþÿ AsIsþ  NA NA NA NA NA NA NA NA NA NA NAÿ AsIsþ  NA NA R (>= 2.1.0) tilingArray GO R (>= 1.9.0) affy R (>= 1.9.0) affy (>= 1.4) R Biobase NA NA R (>= 1.6) affy (>= 1.0) NAÿ AsIsþ A data package 0exprSet for Alon et al. (1999) colon cancer data JData and analysis scripts for David, Huber et al. yeast tiling array paper /Experimental data with Affymetrix E. coli chips ?2x2 factorial design exercise for the Bioconductor short course 2Saghatelian et al. (2004) FAAH knockout LC/MS data 2exprSet for Karaman et al. (2003) fibroblasts data exprSets for golub leukemia data 2exprSets for Iyer, Eisen et all 1999 Science paper %Affymetrix's Spike-In Experiment Data 7Spellman et al. (1998) yeast cell cycle microarray dataÿ AsIsþ  NA NA NA NA NA xcms NA NA NA NA NAÿ AsIsþ  NA NA NA NA NA NA NA NA NA NA NAÿ AsIsþ  NA NA NA NA NA NA NA NA NA NA NAÿ AsIsþ rData of T- and B-cell Acute Lymphocytic Leukemia from the Ritz Laboratory at the DFCI (includes Apr 2004 versions) 0exprSet for Alon et al. (1999) colon cancer data JThis package contains the data for the paper cited below: 8 CEL files of Affymetrix genechips, the eSet object, a probe annotation data structure for the chip, and the yeast genome annotation (GFF file) that was used. In addition, some custom-written analysis functions are provided, as well as R scripts in the scripts directory. µExperimental data with Affymetrix E. coli chips, as reported in She-pin Hung, Pierre Baldi, and G. Wesley Hatfield, J. Biol. Chem., Vol. 277, Issue 43, 40309-40323, October 25, 2002 ^Data from 8 Affymetrix genechips, looking at a 2x2 factorial design (with 2 repeats per level) #Positive ionization mode data in NetCDF file format. Centroided subset from 200-600 m/z and 2500-4500 seconds. Data originally reported in "Assignement of Endogenous Substrates to Enzymes by Global Metabolite Profiling" Biochemistry; 2004; 43(45). Also includes detected peaks in an xcmsSet. LexprSet for Karaman et al. (2003) human, bonobo and gorilla fibroblasts data orepresentation of public golub data with some covariate data of provenance unknown to the maintainer at present Zrepresentation of public Iyer data from http://genome-www.stanford.edu/serum/clusters.html 6Contains the HGU133 and HGU95 spikein experiment data. IexprSet for Spellman et al. (1998) yeast cell cycle microarray experimentÿ AsIsþ NA NA http://www.ebi.ac.uk/huber NA NA #http://dx.doi.org/10.1021/bi0480335 NA NA NA NA NAÿ AsIsþ Xiaochun Li Sylvia Merk EWolfgang Huber , Joern Toedling Laurent Gautier Wolfgang Huber, Robert Gentleman #Colin A. Smith Sylvia Merk Todd Golub $Vishy Iyer Rafael Irizarry ,Sandrine Dudoit ÿ AsIsþ (Xiaochun Li .WSylvia Merk Wolfgang Huber Laurent (R. Gentleman #Colin A. Smith *Sylvia Merk (Vince Carey (Vince Carey !Rafael A. Irizarry ,Sandrine Dudoit ÿ AsIsþ GPL unknown LGPL GPL version 2 or newer LGPL unknown unknown unknown unknown LGPL unknownÿ AsIsþ NA NA NA NA NA NA NA NA NA NA NAÿ AsIsþ NA NA NA NA NA NA NA NA NA NA NAÿ AsIsþ NA NA NA NA NA NA NA NA NA NA NAÿ AsIsþ NA NA NA NA NA NA NA NA NA NA NAÿ AsIsþ  NA NA NA NA NA NA NA NA NA NA NAÿ AsIsþ ÿÿÿÿ ÿÿÿÿ ÿÿÿÿ ÿÿÿÿ ÿÿÿÿ ÿÿÿÿ ÿÿÿÿ ÿÿÿÿ ÿÿÿÿ ÿÿÿÿ ÿÿÿÿÿ AsIsþ  ALL_1.0.2.zip OK 2.2.0 2005-10-14 10:24:04 names File Status Rvers Dateþÿ Win32þ colonCA_1.1.1.zip OK 2.2.0 2005-10-14 10:14:03ÿ File Status Rvers Dateþÿ Win32þ davidTiling_1.0.0.zip OK 2.2.1 2006-03-17 13:15:18ÿ File Status Rvers Dateþÿ Win32þ ecoliLeucine_0.1-1.zip OK 2.2.0 2005-10-14 10:14:17ÿ File Status Rvers Dateþÿ Win32þ estrogen_1.5.0.zip OK 2.2.0 2005-10-14 10:16:53ÿ File Status Rvers Dateþÿ Win32þ faahKO_1.0.zip OK 2.2.0 2005-10-14 10:19:28ÿ File Status Rvers Dateþÿ Win32þ fibroEset_1.0.zip OK 2.2.0 2005-10-14 10:21:37ÿ File Status Rvers Dateþÿ Win32þ golubEsets_1.0.1.zip OK 2.2.0 2005-10-17 08:50:35ÿ File Status Rvers Dateþÿ Win32þ Iyer517_1.0.3.zip OK 2.2.0 2005-10-14 10:12:22ÿ File Status Rvers Dateþÿ Win32þ SpikeIn_1.0.1.zip OK 2.2.0 2005-10-14 10:13:02ÿ File Status Rvers Dateþÿ Win32þ yeastCC_0.5.1.zip OK 2.2.0 2005-10-14 10:22:29ÿ File Status Rvers Dateþÿ Win32þ €€€€€€€€€€€ÿ Package Version Keywords Depends Title Suggests Imports Replaces Description URL Author Maintainer License Status Priority SystemRequirements ReleaseLevel Contains Uses OSspecific KeySearchOrder row.names ALL:v:1.0.2 colonCA:v:1.1.1 davidTiling:v:1.0.0 ecoliLeucine:v:0.1-1 estrogen:v:1.5.0 faahKO:v:1.0 fibroEset:v:1.0 golubEsets:v:1.0.1 Iyer517:v:1.0.3 SpikeIn:v:1.0.1 yeastCC:v:0.5.1ÿ data.frame Pkgþ dfþ