Package: hgu2beta7

Version: 1.2.0

Command: /home/biocbuild/bbs-2.0-bioc/R/bin/R CMD check hgu2beta7_1.2.0.tar.gz

RetCode: 1

Time: 10.5 seconds

Status: ERROR

CheckDir: hgu2beta7.Rcheck

Warnings: NA

* checking for working latex ... OK
* using log directory '/home/biocbuild/bbs-2.0-data-experiment/meat/hgu2beta7.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'hgu2beta7/DESCRIPTION' ... OK
* this is package 'hgu2beta7' version '1.2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hgu2beta7' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
Error in `parent.env<-`(`*tmp*`, value = NULL) : 
	use of NULL environment is defunct
Execution halted
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... WARNING
Error in `parent.env<-`(`*tmp*`, value = NULL) : 
	use of NULL environment is defunct
Execution halted
See section 'Generic functions and methods' of the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... WARNING
Error in `parent.env<-`(`*tmp*`, value = NULL) : 
	use of NULL environment is defunct
Execution halted
See the chapter 'System and foreign language interfaces' of the 'Writing R
Extensions' manual.
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Error in `parent.env<-`(`*tmp*`, value = NULL) : 
	use of NULL environment is defunct
Execution halted
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating hgu2beta7-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'hgu2beta7-Ex.R' failed.
The error most likely occurred in:

> ### * hgu2beta7ACCNUM
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: hgu2beta7ACCNUM
> ### Title: Mappings between probe identifiers and manufacturer or user
> ###   provided identifiers
> ### Aliases: hgu2beta7ACCNUM
> ### Keywords: datasets
> 
> ### ** Examples
> 
>         # Convert to a list
>         xx <- as.list(hgu2beta7ACCNUM)
Error in `parent.env<-`(`*tmp*`, value = NULL) : 
	use of NULL environment is defunct
Execution halted

* Installing *source* package 'hgu2beta7' ...
** R
** data
**  moving datasets to lazyload DB
** help
 >>> Building/Updating help pages for package 'hgu2beta7'
     Formats: text html latex example 
  hgu2beta7                         text    html    latex
  hgu2beta7ACCNUM                   text    html    latex   example
  hgu2beta7CHR                      text    html    latex   example
  hgu2beta7CHRLENGTHS               text    html    latex   example
  hgu2beta7CHRLOC                   text    html    latex   example
  hgu2beta7ENZYME                   text    html    latex   example
  hgu2beta7ENZYME2PROBE             text    html    latex   example
  hgu2beta7GENENAME                 text    html    latex   example
  hgu2beta7GO                       text    html    latex   example
  hgu2beta7GO2ALLPROBES             text    html    latex   example
  hgu2beta7GO2PROBE                 text    html    latex   example
  hgu2beta7GRIF                     text    html    latex   example
  hgu2beta7LOCUSID                  text    html    latex   example
  hgu2beta7MAP                      text    html    latex   example
  hgu2beta7OMIM                     text    html    latex   example
  hgu2beta7ORGANISM                 text    html    latex   example
  hgu2beta7PATH                     text    html    latex   example
  hgu2beta7PATH2PROBE               text    html    latex   example
  hgu2beta7PMID                     text    html    latex   example
  hgu2beta7PMID2PROBE               text    html    latex   example
  hgu2beta7QC                       text    html    latex
  hgu2beta7REFSEQ                   text    html    latex   example
  hgu2beta7SUMFUNC                  text    html    latex   example
  hgu2beta7SYMBOL                   text    html    latex   example
  hgu2beta7UNIGENE                  text    html    latex   example
** building package indices ...
* DONE (hgu2beta7)