############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL HiCcompare ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'HiCcompare' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Note: wrong number of arguments to 'ceiling' ** help *** installing help indices converting help for package 'HiCcompare' finding HTML links ... done HMEC.chr10 html HMEC.chr22 html HiCcompare-package html KRnorm html MA_norm html MD.plot1 html MD.plot2 html NHEK.chr10 html NHEK.chr22 html SCN html brain_table html centromere_locations html cooler html cooler2bedpe html cooler2sparse html create.hic.table html filter_params html full2sparse html get_CNV html hg19_blacklist html hg38_blacklist html hic_compare html hic_diff html hic_loess html hic_simulate html hicpro2bedpe html hmec.IS html make_InteractionSet html manhattan_plot html nhek.IS html remove_centromere html sim.other.methods html sim_matrix html sparse2full html split_centromere html total_sum html visualize_pvals html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCcompare) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'RpsiXML' is missing or broken done