############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL SparseSignatures ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'SparseSignatures' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SparseSignatures' finding HTML links ... done background html background2 html cv_example html import.trinucleotides.counts html imported_data html lambdaRangeAlphaEvaluation html lambdaRangeBetaEvaluation html lambda_range_example html mutation_categories html nmfLasso html nmfLassoBootstrap html nmfLassoCV html nmf_LassoK_example html patients html patients.plot html sigAssignmentCV html sigAssignmentEvaluation html sigAssignmentLasso html signatures.plot html ssm560_reduced html startingBetaEstimation html starting_betas_example html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SparseSignatures) Making 'packages.html' ... done