############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocParallel ### ############################################################################## ############################################################################## * checking for file ‘BiocParallel/DESCRIPTION’ ... OK * preparing ‘BiocParallel’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Introduction_To_BiocParallel.Rmd’ using rmarkdown --- finished re-building ‘Introduction_To_BiocParallel.Rmd’ --- re-building ‘Random_Numbers.Rmd’ using rmarkdown --- finished re-building ‘Random_Numbers.Rmd’ --- re-building ‘BiocParallel_BatchtoolsParam.Rnw’ using knitr Error: processing vignette 'BiocParallel_BatchtoolsParam.Rnw' failed with diagnostics: Running 'texi2dvi' on 'BiocParallel_BatchtoolsParam.tex' failed. LaTeX errors: ! Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... ! Emergency stop. ... l.78 ...}{rgb}{0.941, 0.941, 0.941}\color{fgcolor} \begin{kframe} ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘BiocParallel_BatchtoolsParam.Rnw’ --- re-building ‘Errors_Logs_And_Debugging.Rnw’ using knitr Error: processing vignette 'Errors_Logs_And_Debugging.Rnw' failed with diagnostics: Running 'texi2dvi' on 'Errors_Logs_And_Debugging.tex' failed. LaTeX errors: ! Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... ! Emergency stop. ... l.79 ...}{rgb}{0.941, 0.941, 0.941}\color{fgcolor} \begin{kframe} ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘Errors_Logs_And_Debugging.Rnw’ SUMMARY: processing the following files failed: ‘BiocParallel_BatchtoolsParam.Rnw’ ‘Errors_Logs_And_Debugging.Rnw’ Error: Vignette re-building failed. Execution halted