############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MetaScope ### ############################################################################## ############################################################################## * checking for file ‘MetaScope/DESCRIPTION’ ... OK * preparing ‘MetaScope’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MetaScope_vignette.Rmd’ using rmarkdown Quitting from MetaScope_vignette.Rmd:142-155 [target_lib] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `scan()`: ! cannot read from connection --- Backtrace: ▆ 1. └─base::sapply(...) 2. └─base::lapply(X = X, FUN = FUN, ...) 3. └─MetaScope (local) FUN(X[[i]], ...) 4. └─MetaScope:::download_parentkingdom(parent_kingdom, quiet) 5. └─MetaScope:::get_table(parent_kingdom) 6. └─utils::read.table(...) 7. └─base::scan(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MetaScope_vignette.Rmd' failed with diagnostics: cannot read from connection --- failed re-building ‘MetaScope_vignette.Rmd’ SUMMARY: processing the following file failed: ‘MetaScope_vignette.Rmd’ Error: Vignette re-building failed. Execution halted