Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R [S] T  U  V  W  X  Y  Z 

BioC 3.4: CHECK report for spkTools on moscato1

This page was generated on 2016-09-21 03:42:41 -0700 (Wed, 21 Sep 2016).

Package 1149/1257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
spkTools 1.29.0
Matthew N McCall
Snapshot Date: 2016-09-19 19:15:14 -0700 (Mon, 19 Sep 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/spkTools
Last Changed Rev: 117081 / Revision: 121152
Last Changed Date: 2016-05-03 14:30:44 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: spkTools
Version: 1.29.0
Command: rm -rf spkTools.buildbin-libdir spkTools.Rcheck && mkdir spkTools.buildbin-libdir spkTools.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=spkTools.buildbin-libdir spkTools_1.29.0.tar.gz >spkTools.Rcheck\00install.out 2>&1 && cp spkTools.Rcheck\00install.out spkTools-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=spkTools.buildbin-libdir --install="check:spkTools-install.out" --force-multiarch --no-vignettes --timings spkTools_1.29.0.tar.gz
StartedAt: 2016-09-20 17:00:35 -0700 (Tue, 20 Sep 2016)
EndedAt: 2016-09-20 17:02:54 -0700 (Tue, 20 Sep 2016)
EllapsedTime: 139.3 seconds
RetCode: 0
Status:  OK  
CheckDir: spkTools.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf spkTools.buildbin-libdir spkTools.Rcheck && mkdir spkTools.buildbin-libdir spkTools.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=spkTools.buildbin-libdir spkTools_1.29.0.tar.gz >spkTools.Rcheck\00install.out 2>&1 && cp spkTools.Rcheck\00install.out spkTools-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=spkTools.buildbin-libdir --install="check:spkTools-install.out" --force-multiarch --no-vignettes --timings spkTools_1.29.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-bioc/meat/spkTools.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'spkTools/DESCRIPTION' ... OK
* this is package 'spkTools' version '1.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'spkTools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'Biobase'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
spkTools 18.28   0.00   18.29
spkAll   18.05   0.04   18.13
spkGNN    5.97   0.00    5.98
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
          user system elapsed
spkTools 14.37   0.07   14.44
spkAll   13.69   0.03   13.74
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.4-bioc/meat/spkTools.Rcheck/00check.log'
for details.


spkTools.Rcheck/00install.out:


install for i386

* installing *source* package 'spkTools' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'spkTools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'spkTools' as spkTools_1.29.0.zip
* DONE (spkTools)

spkTools.Rcheck/examples_i386/spkTools-Ex.timings:

nameusersystemelapsed
SpikeInExpressSet-class0.140.010.16
plotSpkBox0.840.020.86
spkAccSD0.280.000.28
spkAll18.05 0.0418.13
spkAnova0.070.020.09
spkBal0.080.000.08
spkBox0.860.050.91
spkDensity0.160.000.15
spkGNN5.970.005.98
spkMA1.170.001.17
spkPair0.110.000.11
spkPairNS0.120.000.12
spkPot0.630.010.64
spkQuantile0.090.000.10
spkSlope0.080.000.07
spkTools18.28 0.0018.29
spkVar0.070.020.07
summarySpkBox0.680.000.69

spkTools.Rcheck/examples_x64/spkTools-Ex.timings:

nameusersystemelapsed
SpikeInExpressSet-class0.20.00.2
plotSpkBox0.900.000.91
spkAccSD0.320.000.31
spkAll13.69 0.0313.74
spkAnova0.110.000.11
spkBal0.100.000.09
spkBox0.920.040.97
spkDensity0.150.020.17
spkGNN4.310.004.31
spkMA1.40.01.4
spkPair0.160.000.16
spkPairNS0.150.000.15
spkPot0.860.000.86
spkQuantile0.10.00.1
spkSlope0.090.020.11
spkTools14.37 0.0714.44
spkVar0.070.020.09
summarySpkBox0.850.000.85