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BUILD WEB VIG report for sequencing on malbec1

This page was generated on 2018-05-18 09:51:47 -0400 (Fri, 18 May 2018).

Package 18/21HostnameOS / ArchINSTALLBUILD
sequencing 1.3.0
Martin Morgan
Snapshot Date: 2018-05-18 07:35:07 -0400 (Fri, 18 May 2018)
URL: https://git.bioconductor.org/packages/sequencing
Branch: master
Last Commit: f285ae6
Last Changed Date: 2018-04-30 10:10:33 -0400 (Mon, 30 Apr 2018)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: sequencing
Version: 1.3.0
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/sequencing/sequencing.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/sequencing/sequencing.Rmd", ".buildwebvig/sequencing/sequencing.R")'
StartedAt: 2018-05-18 08:52:24 -0400 (Fri, 18 May 2018)
EndedAt: 2018-05-18 08:52:58 -0400 (Fri, 18 May 2018)
EllapsedTime: 34.0 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'rmarkdown::render(".buildwebvig/sequencing/sequencing.Rmd", output_format="BiocStyle:::html_fragment")' && /home/biocbuild/bbs-3.8-bioc/R/bin/R -q -e 'knitr::purl(".buildwebvig/sequencing/sequencing.Rmd", ".buildwebvig/sequencing/sequencing.R")'
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> rmarkdown::render(".buildwebvig/sequencing/sequencing.Rmd", output_format="BiocStyle:::html_fragment")


processing file: sequencing.Rmd

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label: style (with options) 
List of 4
 $ echo   : logi FALSE
 $ message: logi FALSE
 $ warning: logi FALSE
 $ results: chr "asis"


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label: unnamed-chunk-1 (with options) 
List of 3
 $ echo   : logi FALSE
 $ results: chr "hide"
 $ warning: logi FALSE

snapshotDate(): 2018-05-18

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label: unnamed-chunk-5
downloading 0 resources
loading from cache 
    '/home/biocbuild//.AnnotationHub/22617'
    '/home/biocbuild//.AnnotationHub/25666'

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output file: sequencing.knit.md

/usr/bin/pandoc +RTS -K512m -RTS sequencing.utf8.md --to html4 --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash+smart --output sequencing.html --email-obfuscation none --self-contained --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template /home/biocbuild/bbs-3.8-bioc/R/library/BiocStyle/resources/fragment.html --no-highlight --number-sections --mathjax --variable 'mathjax-url:https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML' 

Output created: sequencing.html
> 
> 
> knitr::purl(".buildwebvig/sequencing/sequencing.Rmd", ".buildwebvig/sequencing/sequencing.R")


processing file: .buildwebvig/sequencing/sequencing.Rmd

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output file: .buildwebvig/sequencing/sequencing.R

[1] ".buildwebvig/sequencing/sequencing.R"
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