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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SeqArray
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* checking for file ‘SeqArray/DESCRIPTION’ ... OK
* preparing ‘SeqArray’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘OverviewSlides.Rmd’ using rmarkdown
--- finished re-building ‘OverviewSlides.Rmd’

--- re-building ‘SeqArray.Rmd’ using rmarkdown
2025-11-20 17:40:35.944 R[96267:100348822] XType: Using static font registry.

Quitting from SeqArray.Rmd:293-299 [unnamed-chunk-11]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `seqAsVCF()`:
! Please install VariantAnnotation to use this function
---
Backtrace:
    ▆
 1. └─SeqArray::seqAsVCF(file, chr.prefix = "chr")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SeqArray.Rmd' failed with diagnostics:
Please install VariantAnnotation to use this function
--- failed re-building ‘SeqArray.Rmd’

--- re-building ‘SeqArrayTutorial.Rmd’ using rmarkdown
--- finished re-building ‘SeqArrayTutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘SeqArray.Rmd’

Error: Vignette re-building failed.
Execution halted