Back to Multiple platform build/check report for BioC 3.23:   simplified   long
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This page was generated on 2025-11-19 10:12 -0500 (Wed, 19 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4827
lconwaymacOS 12.7.6 Montereyx86_64R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" 4600
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" 4564
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

All results for package ShortRead


To the developers/maintainers of the ShortRead package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ShortRead.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Package 1973/2325HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ShortRead 1.69.2  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2025-11-18 13:40 -0500 (Tue, 18 Nov 2025)
git_url: https://git.bioconductor.org/packages/ShortRead
git_branch: devel
git_last_commit: ab09a1b
git_last_commit_date: 2025-11-05 13:00:35 -0500 (Wed, 05 Nov 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    WARNINGS    OK  NO, package depends on 'Rsamtools' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  NO, package depends on 'Rsamtools' which is only available as a source package that needs compilation


Results for Bioconductor software packages that depend directly on package ShortRead

QUICK STATSOS / ArchINSTALLBUILDCHECKBUILD BIN
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64
0126
0225
01618
lconwaymacOS 12.7.6 Monterey / x86_64
0126
0225
01618
0025
kjohnson3macOS 13.7.7 Ventura / arm64
0126
0324
01518
0024
Package 1/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
amplican 1.33.1  (landing page)
Eivind Valen
git_last_commit: dd29ebe
git_last_commit_date: 2025-11-11 10:24:22 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
Package 2/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
basecallQC 1.35.0  (landing page)
Thomas Carroll
git_last_commit: f54574a
git_last_commit_date: 2025-10-29 10:38:02 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    ERROR  
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    ERROR    OK  
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    ERROR    OK  
Package 3/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BEAT 1.49.0  (landing page)
Kemal Akman
git_last_commit: 3a301bb
git_last_commit_date: 2025-10-29 10:17:47 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation
Package 4/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellBarcode 1.17.0  (landing page)
Wenjie Sun
git_last_commit: bc09e4a
git_last_commit_date: 2025-10-29 11:13:43 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
Package 5/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
chipseq 1.61.0  (landing page)
Bioconductor Package Maintainer
git_last_commit: f81d061
git_last_commit_date: 2025-10-29 10:02:59 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    WARNINGS    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation
Package 6/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPseqR 1.65.0  (landing page)
Peter Humburg
git_last_commit: 7948588
git_last_commit_date: 2025-10-29 10:03:52 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation
Package 7/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPsim 1.65.0  (landing page)
Peter Humburg
git_last_commit: 5fed093
git_last_commit_date: 2025-10-29 10:03:24 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
Package 8/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CircSeqAlignTk 1.13.0  (landing page)
Jianqiang Sun
git_last_commit: 4415fca
git_last_commit_date: 2025-10-29 11:19:05 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
Package 9/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
dada2 1.39.0  (landing page)
Benjamin Callahan
git_last_commit: 29f93c2
git_last_commit_date: 2025-10-29 10:30:17 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    WARNINGS    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
Package 10/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
easyRNASeq 2.47.0  (landing page)
Nicolas Delhomme
git_last_commit: 1cb9a73
git_last_commit_date: 2025-10-29 10:10:00 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    WARNINGS    OK  NO, package depends on 'GenomicAlignments' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
Package 11/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EDASeq 2.45.0  (landing page)
Davide Risso
git_last_commit: 1f147bc
git_last_commit_date: 2025-10-29 10:08:53 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
Package 12/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
esATAC 1.33.0  (landing page)
Zheng Wei
git_last_commit: 90d779d
git_last_commit_date: 2025-10-29 10:42:12 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped
lconwaymacOS 12.7.6 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    ERROR  skippedskipped
Package 13/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FastqCleaner 1.29.0  (landing page)
Leandro Roser
git_last_commit: 464323c
git_last_commit_date: 2025-10-29 10:45:40 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
Package 14/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FLAMES 2.5.1  (landing page)
Changqing Wang
git_last_commit: 7887658
git_last_commit_date: 2025-10-31 02:11:54 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'bambu' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'bambu' which is only available as a source package that needs compilation
Package 15/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GOTHiC 1.47.0  (landing page)
Borbala Mifsud
git_last_commit: 7af2557
git_last_commit_date: 2025-10-29 10:52:56 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation
Package 16/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
icetea 1.29.0  (landing page)
Vivek Bhardwaj
git_last_commit: 2bfbdfd
git_last_commit_date: 2025-10-29 10:45:57 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    WARNINGS    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
Package 17/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IONiseR 2.35.0  (landing page)
Mike Smith
git_last_commit: c0803bd
git_last_commit_date: 2025-10-29 10:26:28 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
Package 18/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
nucleR 2.43.0  (landing page)
Alba Sala
git_last_commit: 3db28f8
git_last_commit_date: 2025-10-29 10:08:16 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    WARNINGS    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation
Package 19/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OTUbase 1.61.0  (landing page)
Daniel Beck
git_last_commit: 42c921c
git_last_commit_date: 2025-10-29 10:05:45 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
Package 20/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
QuasR 1.51.0  (landing page)
Michael Stadler
git_last_commit: 331f3b2
git_last_commit_date: 2025-10-29 10:13:16 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    WARNINGS    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    WARNINGS    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation
Package 21/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
R453Plus1Toolbox 1.61.0  (landing page)
Hans-Ulrich Klein
git_last_commit: b396ba9
git_last_commit_date: 2025-10-29 10:06:02 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
lconwaymacOS 12.7.6 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
Package 22/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Rqc 1.45.0  (landing page)
Welliton Souza
git_last_commit: 81cf3fd
git_last_commit_date: 2025-10-29 10:22:46 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'ShortRead' which is only available as a source package that needs compilation
Package 23/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RSVSim 1.51.0  (landing page)
Christoph Bartenhagen
git_last_commit: d131b77
git_last_commit_date: 2025-10-29 10:13:10 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation
Package 24/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
scruff 1.29.0  (landing page)
Zhe Wang
git_last_commit: e5f29bf
git_last_commit_date: 2025-10-29 10:46:27 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'GenomicAlignments' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'GenomicAlignments' which is only available as a source package that needs compilation
Package 25/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
segmentSeq 2.45.0  (landing page)
Samuel Granjeaud
git_last_commit: a33a34a
git_last_commit_date: 2025-10-29 10:04:32 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation
Package 26/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
systemPipeR 2.17.0  (landing page)
Thomas Girke
git_last_commit: 378a792
git_last_commit_date: 2025-10-29 10:21:27 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'Rsamtools' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'Rsamtools' which is only available as a source package that needs compilation
Package 27/27HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
UMI4Cats 1.21.0  (landing page)
Mireia Ramos-Rodriguez
git_last_commit: f049a0a
git_last_commit_date: 2025-10-29 11:01:19 -0500
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.6 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is only available as a source package that needs compilation