############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data excluderanges ### ############################################################################## ############################################################################## * checking for file ‘excluderanges/DESCRIPTION’ ... OK * preparing ‘excluderanges’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘excluderanges.Rmd’ using rmarkdown Quitting from excluderanges.Rmd:110-116 [hg38excluderanges] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `keepStandardChromosomes()`: ! could not find function "keepStandardChromosomes" --- Backtrace: ▆ 1. └─excludeGR.hg38.Kundaje.1 %>% sort() %>% ... ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'excluderanges.Rmd' failed with diagnostics: could not find function "keepStandardChromosomes" --- failed re-building ‘excluderanges.Rmd’ SUMMARY: processing the following file failed: ‘excluderanges.Rmd’ Error: Vignette re-building failed. Execution halted