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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data maEndToEnd
###
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* checking for file ‘maEndToEnd/DESCRIPTION’ ... OK
* preparing ‘maEndToEnd’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MA-Workflow.Rmd’ using rmarkdown

Quitting from MA-Workflow.Rmd:223-228 [getDataEBI]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Transferred a partial file [www.ebi.ac.uk]:
transfer closed with 11140 bytes remaining to read
---
Backtrace:
    ▆
 1. ├─ArrayExpress::getAE("E-MTAB-2967", path = raw_data_dir, type = "raw")
 2. │ └─ArrayExpress:::get_request(httpURL)
 3. │   └─httr::GET(qr)
 4. │     └─httr:::request_perform(req, hu$handle$handle)
 5. │       ├─httr:::request_fetch(req$output, req$url, handle)
 6. │       └─httr:::request_fetch.write_memory(req$output, req$url, handle)
 7. │         └─curl::curl_fetch_memory(url, handle = handle)
 8. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MA-Workflow.Rmd' failed with diagnostics:
Transferred a partial file [www.ebi.ac.uk]:
transfer closed with 11140 bytes remaining to read
--- failed re-building ‘MA-Workflow.Rmd’

SUMMARY: processing the following file failed:
  ‘MA-Workflow.Rmd’

Error: Vignette re-building failed.
Execution halted