############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r ANCOMBC -R && E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ANCOMBC ### ############################################################################## ############################################################################## * checking for file 'ANCOMBC/DESCRIPTION' ... OK * preparing 'ANCOMBC': * checking DESCRIPTION meta-information ... OK * installing the package to process help pages Loading required namespace: ANCOMBC * saving partial Rd database * creating vignettes ... ERROR --- re-building 'ANCOM.Rmd' using rmarkdown --- finished re-building 'ANCOM.Rmd' --- re-building 'ANCOMBC.Rmd' using rmarkdown --- finished re-building 'ANCOMBC.Rmd' --- re-building 'ANCOMBC2.Rmd' using rmarkdown --- finished re-building 'ANCOMBC2.Rmd' --- re-building 'SECOM.Rmd' using rmarkdown Quitting from lines 98-113 [unnamed-chunk-2] (SECOM.Rmd) Error: processing vignette 'SECOM.Rmd' failed with diagnostics: unused arguments (probs = wins_quant, na.rm = TRUE) --- failed re-building 'SECOM.Rmd' SUMMARY: processing the following file failed: 'SECOM.Rmd' Error: Vignette re-building failed. Execution halted