GOstats

Tools for manipulating GO and microarrays.

Bioconductor version: Development (2.8)

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Author: R. Gentleman and S. Falcon

Maintainer: Biocore Team c/o BioC user list

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("GOstats")    

Documentation

PDF		Hypergeometric tests for less common model organisms
PDF	R Script	Hypergeometric Tests Using GOstats
PDF	R Script	Visualizing Data Using GOstats

Reference Manual

Details

biocViews	Bioinformatics, Annotation, GO, MultipleComparisons
Depends	Biobase, Category, graph
Imports	AnnotationDbi, Biobase, Category, GO.db, RBGL, annotate, graph, methods, stats
Suggests	hgu95av2.db, ALL, GO.db, annotate, multtest, genefilter, RColorBrewer, Rgraphviz, xtable, SparseM
System Requirements
License	Artistic-2.0
URL
Depends On Me	attract, oneChannelGUI
Imports Me	affycoretools, attract, clusterProfiler
Suggests Me	BiocCaseStudies, GSEAlm, HTSanalyzeR, MLP, eisa, phenoDist, qpgraph, safe
Version	2.17.1

Package Downloads

Package Source	GOstats_2.17.1.tar.gz
Windows Binary	GOstats_2.17.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	GOstats_2.17.1.tgz
Package Downloads Report	Download Stats