rama

Robust Analysis of MicroArrays

Bioconductor version: Development (2.8)

Robust estimation of cDNA microarray intensities with replicates. The package uses a Bayesian hierarchical model for the robust estimation. Outliers are modeled explicitly using a t-distribution, and the model also addresses classical issues such as design effects, normalization, transformation, and nonconstant variance.

Author: Raphael Gottardo

Maintainer: Raphael Gottardo

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("rama")    

Documentation

PDF

R Script

rama Tutorial

Reference Manual

Details

biocViews	Microarray, TwoChannel, QualityControl, Preprocessing
Depends	R
Imports
Suggests
System Requirements
License	GPL (>= 2)
URL
Depends On Me	bridge
Imports Me
Suggests Me
Version	1.25.1

Package Downloads

Package Source	rama_1.25.1.tar.gz
Windows Binary	rama_1.25.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	rama_1.25.1.tgz
Package Downloads Report	Download Stats