BioC2012

Seattle, USA

2012-07-23 ~ 2012-07-25

Instructors

• Alejandro Reyes
• Benilton Carvalho
• Davis McCarthy
• Florian Hahne
• Hervé Pagès
• James W. MacDonald
• Jeremiah Degenhardt
• Marc Carlson
• Martin Morgan
• Matthew N. McCall
• Matthew Ritchie
• Michael Lawrence
• Paul J. McMurdie
• Qianxing Mo
• Robert Castelo
• Roger Day
• Sean Davis
• Steffen Durinck
• Tengfei Yin
• Valerie Obenchain
• Wolfgang Huber

Description

This conference highlights current developments within and beyond Bioconductor, an international open source and open development software project for the analysis and comprehension of high-throughput genomic data.

Materials

If you are a participant in this conference, please see the BioC2012 Setup Guide.

R / Bioconductor for Everyone

Slides

PDF R Rnw

pData.csv

Differential expression analysis of count data from high-throughput sequencing

DESeq

PDF R Rnw

DEXSeq

PDF R Rnw

High-level S4 containers for HTS data

PDF R Rnw

edgeR - Differential Expression Analysis of RNA-Seq Data

Course Materials

Inferring molecular regulatory networks from expression, genotype and phenotype data with the qpgraph package

Slides

PDF R

Data Files

YeastGG.RData

yeastractRegTwoColTable.tsv

SNPs, SNVs and somatic mutations: Harnessing bioconductor tools for the analysis of next-gen sequence nucleotide variation data

R script 1 R script 2

Applying IRanges, GenomicRanges and Friends to the Analysis of RNA-seq Data

PDF R Rnw

ChIP-seq data analysis using iSeq package

Course Materials