To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("MSstats")
In most cases, you don't need to download the package archive at all.
This package is for version 2.13 of Bioconductor; for the stable, up-to-date release version, see MSstats.
Bioconductor version: 2.13
A set of tools for protein significance analysis in label-free or LC-MS, SRM and DIA experiments.
Author: Meena Choi <choi67 at purdue.edu>, Ching-Yun Chang <chang54 at purdue.edu>, Olga Vitek <ovitek at purdue.edu>
Maintainer: Meena Choi <choi67 at purdue.edu>
Citation (from within R,
enter citation("MSstats")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("MSstats")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MSstats")
Comparison1.pdf | ||
Comparison2.pdf | ||
Condition1.pdf | ||
Condition2.pdf | ||
DIA_constant_QQPlot4.pdf | ||
DIA_constant_ResidualPlot4.pdf | ||
DIA_ProfilePlot_269.pdf | ||
DIA_ProfilePlot_377.pdf | ||
Heatmap45Yeast1.pdf | ||
Heatmap45Yeast2.pdf | ||
LCMS_constant_ResidualPlot.pdf | ||
LCMS_Heatmap.pdf | ||
LCMS_ProfilePlot.pdf | ||
MSstatsOverview.pdf | ||
power.pdf | ||
ProfilePlot1.pdf | ||
ProfilePlot2.pdf | ||
R Script | Protein quantification in LC-MS, SRM, DIA experiments | |
QCPlot_all.pdf | ||
QCPlot_all_before.pdf | ||
QQPlot2.pdf | ||
ResidualPlot2.pdf | ||
SampleSizeReplicateYeast.pdf | ||
SRM_QQPlot_perFeature_heavy.pdf | ||
SRM_QQPlot_perFeature_light.pdf | ||
Volcano45Yeast1.pdf | ||
Volcano45Yeast2.pdf | ||
VolcanoYeast1.pdf | ||
VolcanoYeast2.pdf | ||
Reference Manual | ||
Text | NEWS |
biocViews | Software |
Version | 2.0.1 |
In Bioconductor since | BioC 2.13 (R-3.0) (2.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.0), Rcpp, MSnbase |
Imports | lme4, marray, limma, gplots, ggplot2 |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | MSstats_2.0.1.tar.gz |
Windows Binary | MSstats_2.0.1.zip |
Mac OS X 10.6 (Snow Leopard) | MSstats_2.0.1.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/MSstats/tree/release-2.13 |
Package Short Url | http://bioconductor.org/packages/MSstats/ |
Package Downloads Report | Download Stats |
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