CHANGES IN VERSION 1.2.0 ------------------------ NEW FEATURES o This package was released as a Bioconductor package (previously CRAN). o WAD method for identifying DEGs was added. o ROKU method for identifying tissue-specific genes was added. o 'increment' argument of 'calcNormFactor' function was added. SIGNIFICANT USER-VISIBLE CHANGES o 'replicates' field of TCC class was deleted. CHANGES IN VERSION 1.1.3 ------------------------ SIGNIFICANT USER-VISIBLE CHANGES o 'generateSimulationData' function was renamed to 'simulateReadCount'. o 'names' field of TCC class was changed to 'gene_id'. o 'hypoData' was reduced to a smaller data set. o 'hypoData_mg' was created. This is the simulation dataset which consists of 1,000 genes and 9 samples. CHANGES IN VERSION 1.0.0 ------------------------ SIGNIFICANT USER-VISIBLE CHANGES o 'TCC' class was implemented as a R5 reference class. Wrapper functions with functional programming semantics were proviede.