To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SomaticSignatures")

In most cases, you don't need to download the package archive at all.

SomaticSignatures

This package is for version 2.14 of Bioconductor; for the stable, up-to-date release version, see SomaticSignatures.

Somatic Signatures

Bioconductor version: 2.14

The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs).

Author: Julian Gehring, with contribution of Bernd Fischer (EMBL Heidelberg)

Maintainer: Julian Gehring <julian.gehring at embl.de>

Citation (from within R, enter citation("SomaticSignatures")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SomaticSignatures")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SomaticSignatures")

biocViews	Cancer, Clustering, GenomicVariation, HighThroughputSequencingData, PrinicpalComponent, Sequencing, Software, SomaticMutation, StatisticalMethod, Visualization
Version	1.0.1
In Bioconductor since	BioC 2.14 (R-3.1) (2 years)
License	GPL-3
Depends	R (>= 3.0.2)
Imports	GenomeInfoDb, GenomicRanges, IRanges, VariantAnnotation, Biostrings, ggplot2, ggbio, stringr, reshape2, NMF, methods, pcaMethods, gtools
LinkingTo
Suggests	testthat, knitr, BiocStyle, parallel, BSgenome.Hsapiens.UCSC.hg19, SomaticCancerAlterations, h5vc, h5vcData, fastICA
SystemRequirements
Enhances
URL	http://bioconductor.org/packages/release/bioc/html/SomaticSignatures.html https://github.com/julian-gehring/SomaticSignatures
Depends On Me
Imports Me	Rariant
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	SomaticSignatures_1.0.1.tar.gz
Windows Binary	SomaticSignatures_1.0.1.zip
Mac OS X 10.6 (Snow Leopard)	SomaticSignatures_1.0.1.tgz
Mac OS X 10.9 (Mavericks)	SomaticSignatures_1.0.1.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/SomaticSignatures/tree/release-2.14
Package Short Url	http://bioconductor.org/packages/SomaticSignatures/
Package Downloads Report	Download Stats

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