| Package | Maintainer | Title |
|---|---|---|
| ChIPpeakAnno | Lihua Julie Zhu | Batch annotation of the peaks identified from either ChIP-seq or ChIP-chip experiments. |
| MotIV | Eloi Mercier , Raphael Gottardo | Motif Identification and Validation |
| oligo | Benilton Carvalho | Preprocessing tools for oligonucleotide arrays. |
| rGADEM | Arnaud Droit | de novo motif discovery |
| Starr | Benedikt Zacher | Simple tiling array analysis of Affymetrix ChIP-chip data |