Bioconductor Task View: Homo_sapiens

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Package Maintainer Title
BSgenome.Hsapiens.UCSC.hg17 Biocore Team c/o BioC user list Homo sapiens (Human) full genome (UCSC version hg17)
BSgenome.Hsapiens.UCSC.hg18 Biocore Team c/o BioC user list Homo sapiens (Human) full genome (UCSC version hg18)
BSgenome.Hsapiens.UCSC.hg19 Biocore Team c/o BioC user list Homo sapiens (Human) full genome (UCSC version hg19)
cyp450cdf Biocore Data Team cyp450cdf
gahgu133aprobe Francesco Ferrari Probe sequence data for microarrays of type gahgu133a
gahgu133bprobe Francesco Ferrari Probe sequence data for microarrays of type gahgu133b
gahgu133plus2probe Francesco Ferrari Probe sequence data for microarrays of type gahgu133plus2
gahgu95av2probe Francesco Ferrari Probe sequence data for microarrays of type gahgu95av2
gahgu95bprobe Francesco Ferrari Probe sequence data for microarrays of type gahgu95b
gahgu95cprobe Francesco Ferrari Probe sequence data for microarrays of type gahgu95c
gahgu95dprobe Francesco Ferrari Probe sequence data for microarrays of type gahgu95d
gahgu95eprobe Francesco Ferrari Probe sequence data for microarrays of type gahgu95e
GGHumanMethCancerPanelv1.db Sean Davis Illumina Golden Gate Human Methylation Cancer Panel Version 1 annotation data (chip GGHumanMethCancerPanelv1)
gp53cdf Biocore Data Team gp53cdf
h10kcod.db Diego Diez GE CodeLink UniSet Human I Bioarray (~10 000 human genes) annotation data (chip h10kcod)
h20kcod.db Diego Diez GE CodeLink UniSet Human 20k I Bioarray annotation data (chip h20kcod)
hcg110.db Biocore Data Team Affymetrix Human Cancer G110 Array annotation data (chip hcg110)
hcg110cdf Biocore Data Team hcg110cdf
hcg110probe Biocore Data Team Probe sequence data for microarrays of type hcg110
hgfocus.db Biocore Data Team Affymetrix Human Genome Focus Array annotation data (chip hgfocus)
hgfocuscdf Biocore Data Team hgfocuscdf
hgfocusprobe Biocore Data Team Probe sequence data for microarrays of type hgfocus
hgu133a.db Biocore Data Team Affymetrix Human Genome U133 Set annotation data (chip hgu133a)
hgu133a2.db Biocore Data Team Affymetrix Human Genome U133A 2.0 Array annotation data (chip hgu133a2)
hgu133a2cdf Biocore Data Team hgu133a2cdf
hgu133a2probe Biocore Data Team Probe sequence data for microarrays of type hgu133a2
hgu133acdf Biocore Data Team hgu133acdf
hgu133aprobe Biocore Data Team Probe sequence data for microarrays of type hgu133a
hgu133atagcdf Biocore Data Team hgu133atagcdf
hgu133atagprobe Biocore Data Team Probe sequence data for microarrays of type hgu133atag
hgu133b.db Biocore Data Team Affymetrix Human Genome U133 Set annotation data (chip hgu133b)
hgu133bcdf Biocore Data Team hgu133bcdf
hgu133bprobe Biocore Data Team Probe sequence data for microarrays of type hgu133b
hgu133plus2.db Biocore Data Team Affymetrix Human Genome U133 Plus 2.0 Array annotation data (chip hgu133plus2)
hgu133plus2cdf Biocore Data Team hgu133plus2cdf
hgu133plus2probe Biocore Data Team Probe sequence data for microarrays of type hgu133plus2
hgu95a.db Biocore Data Team Affymetrix Human Genome U95 Set annotation data (chip hgu95a)
hgu95acdf Biocore Data Team hgu95acdf
hgu95aprobe Biocore Data Team Probe sequence data for microarrays of type hgu95a
hgu95av2 Biocore Data Team Affymetrix Human Genome U95 Set Annotation Data (hgu95av2)
hgu95av2.db Biocore Data Team Affymetrix Human Genome U95 Set annotation data (chip hgu95av2)
hgu95av2cdf Biocore Data Team hgu95av2cdf
hgu95av2probe Biocore Data Team Probe sequence data for microarrays of type hgu95av2
hgu95b.db Biocore Data Team Affymetrix Human Genome U95 Set annotation data (chip hgu95b)
hgu95bcdf Biocore Data Team hgu95bcdf
hgu95bprobe Biocore Data Team Probe sequence data for microarrays of type hgu95b
hgu95c.db Biocore Data Team Affymetrix Human Genome U95 Set annotation data (chip hgu95c)
hgu95ccdf Biocore Data Team hgu95ccdf
hgu95cprobe Biocore Data Team Probe sequence data for microarrays of type hgu95c
hgu95d.db Biocore Data Team Affymetrix Human Genome U95 Set annotation data (chip hgu95d)
hgu95dcdf Biocore Data Team hgu95dcdf
hgu95dprobe Biocore Data Team Probe sequence data for microarrays of type hgu95d
hgu95e.db Biocore Data Team Affymetrix Human Genome U95 Set annotation data (chip hgu95e)
hgu95ecdf Biocore Data Team hgu95ecdf
hgu95eprobe Biocore Data Team Probe sequence data for microarrays of type hgu95e
hguatlas13k.db Biocore Data Team Clontech BD Atlas Long Oligos Human 13K annotation data (chip hguatlas13k)
hgubeta7.db Biocore Data Team Unknown annotation data (chip hgubeta7)
hguDKFZ31.db Biocore Data Team Unknown annotation data (chip hguDKFZ31)
hgug4100a.db Biocore Data Team Agilent Human 1 cDNA Microarray Kit annotation data (chip hgug4100a)
hgug4101a.db Biocore Data Team Agilent Human 2 cDNA Microarry Kit annotation data (chip hgug4101a)
hgug4110b.db Biocore Data Team Agilent Human 1A (V2) annotation data (chip hgug4110b)
hgug4111a.db Biocore Data Team Agilent Human 1B annotation data (chip hgug4111a)
hgug4112a.db Biocore Data Team Agilent "Human Genome, Whole" annotation data (chip hgug4112a)
hguqiagenv3.db Biocore Data Team Qiagen Qiagen V3.0 oligo set annotation data (chip hguqiagenv3)
hi16cod.db Diego Diez GE CodeLink Human Inflammation 16 Bioarray annotation data (chip hi16cod)
hivprtplus2cdf Biocore Data Team hivprtplus2cdf
hom.Hs.inp.db Biocore Data Team Homology information for Homo Sapiens from Inparanoid
hs25kresogen.db Simon de Bernard RNG_MRC Human Pangenomic 25k Set annotation data (chip hs25kresogen)
Hs6UG171.db Biocore Data Team A package containing metadata for Hs6UG171 arrays
hthgu133a.db Biocore Data Team Affymetrix HT Human Genome U133 Array Plate Set annotation data (chip hthgu133a)
hthgu133acdf Biocore Data Team hthgu133acdf
hthgu133aprobe Biocore Data Team Probe sequence data for microarrays of type hthgu133a
hthgu133b.db Biocore Data Team Affymetrix HT Human Genome U133 Array Plate Set annotation data (chip hthgu133b)
hthgu133bcdf Biocore Data Team hthgu133bcdf
hthgu133bprobe Biocore Data Team Probe sequence data for microarrays of type hthgu133b
hthgu133pluspmcdf Biocore Data Team hthgu133pluspmcdf
hthgu133pluspmprobe Biocore Data Team Probe sequence data for microarrays of type hthgu133pluspm
hu35ksuba.db Biocore Data Team Affymetrix Human Genome HU35K Set annotation data (chip hu35ksuba)
hu35ksubacdf Biocore Data Team hu35ksubacdf
hu35ksubaprobe Biocore Data Team Probe sequence data for microarrays of type hu35ksuba
hu35ksubb.db Biocore Data Team Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubb)
hu35ksubbcdf Biocore Data Team hu35ksubbcdf
hu35ksubbprobe Biocore Data Team Probe sequence data for microarrays of type hu35ksubb
hu35ksubc.db Biocore Data Team Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubc)
hu35ksubccdf Biocore Data Team hu35ksubccdf
hu35ksubcprobe Biocore Data Team Probe sequence data for microarrays of type hu35ksubc
hu35ksubd.db Biocore Data Team Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubd)
hu35ksubdcdf Biocore Data Team hu35ksubdcdf
hu35ksubdprobe Biocore Data Team Probe sequence data for microarrays of type hu35ksubd
hu6800.db Biocore Data Team Affymetrix HuGeneFL Genome Array annotation data (chip hu6800)
hu6800cdf Biocore Data Team hu6800cdf
hu6800probe Biocore Data Team Probe sequence data for microarrays of type hu6800
hu6800subacdf Biocore Data Team hu6800subacdf
hu6800subbcdf Biocore Data Team hu6800subbcdf
hu6800subccdf Biocore Data Team hu6800subccdf
hu6800subdcdf Biocore Data Team hu6800subdcdf
HuExExonProbesetLocationHg18 Raffaele A. Calogero Exon-level probeset chromosome location for microarrays of type HuEx
HuExExonProbesetLocationHg19 Raffaele A. Calogero Exon-level probeset chromosome location for microarrays of type HuEx
hugene10stprobeset.db Li, Arthur Affymetrix Human Gene 1.0-ST Probeset Array Revision 5 annotation data (chip hugene10stprobeset)
hugene10sttranscriptcluster.db Li, Arthur Affymetrix Human Gene 1.0-ST Array Transcriptcluster Revision 5 annotation data (chip hugene10sttranscriptcluster)
hugene10stv1cdf Biocore Data Team hugene10stv1cdf
hugene10stv1probe Biocore Data Team Probe sequence data for microarrays of type hugene10stv1
hugene11stprobeset.db Li, Arthur Affymetrix Human Gene 1.1-ST Probeset Array annotation data (chip hugene11stprobeset)
hugene11sttranscriptcluster.db Li, Arthur Affymetrix Human Gene 1.1-ST Array Transcriptcluster annotation data (chip hugene11sttranscriptcluster)
human.db0 Biocore Data Team Base Level Annotation databases for human
humanCHRLOC Biocore Data Team A data package containing annotation data for humanCHRLOC
HuO22.db Biocore Data Team FHCRC Genomics Shared Resource HuO22 Annotation Data (HuO22)
hwgcod.db Diego Diez GE CodeLink Human Whole Genome Bioarray (~55 000 human genes) annotation data (chip hwgcod)
illuminaHumanDASLBeadID.db Mark Dunning Illumina HumanDASL annotation data (chip illuminaHumanDASLBeadID)
IlluminaHumanMethylation27k.db Sean Davis Illumina Illumina Human Methylation 27k annotation data (chip IlluminaHumanMethylation27k)
illuminaHumanv1.db Mark Dunning Illumina HumanWGv1 annotation data (chip illuminaHumanv1)
illuminaHumanv1BeadID.db Mark Dunning Illumina HumanWGv1 annotation data (chip illuminaHumanv1BeadID)
illuminaHumanv2.db Mark Dunning Illumina HumanWGv2 annotation data (chip illuminaHumanv2)
illuminaHumanv2BeadID.db Mark Dunning Illumina HumanWGv2 annotation data (chip illuminaHumanv2BeadID)
illuminaHumanv3.db Mark Dunning Illumina HumanWGv3 annotation data (chip illuminaHumanv3)
illuminaHumanv3BeadID.db Mark Dunning Illumina HumanWGv3 annotation data (chip illuminaHumanv3BeadID)
JazaeriMetaData.db Biocore Data Team A data package containing annotation data for JazaeriMetaData
LAPOINTE.db Biocore Data Team A package containing metadata for LAPOINTE arrays
lumiHumanAll.db Gang Feng and Pan Du Illumina Human Expression BeadChips (include all versions: version 1 to 3) annotation data (chip lumiHumanAll)
mirna10probe Biocore Data Team Probe sequence data for microarrays of type mirna10
Norway981.db Biocore Data Team Norway981 http://genome-www5.stanford.edu/ Annotation Data (Norway981)
nugohs1a520180.db Philip de Groot Affymetrix nugohs1a520180 annotation data (chip nugohs1a520180)
nugohs1a520180cdf Philip de Groot nugohs1a520180cdf
nugohs1a520180probe Philip de Groot Probe sequence data for microarrays of type nugohs1a520180
OperonHumanV3.db Biocore Data Team FHCRC Nelson Lab OperonHumanV3 Annotation Data (OperonHumanV3)
org.Hs.eg.db Biocore Data Team Genome wide annotation for Human
PartheenMetaData.db Biocore Data Team PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData)
pedbarrayv10.db Biocore Data Team FHCRC Nelson Lab pedbarrayv10 Annotation Data (pedbarrayv10)
pedbarrayv9.db Biocore Data Team FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9)
POCRCannotation.db Biocore Data Team A package containing metadata for POCRC arrays
RmiR.Hs.miRNA Francesco Favero Various databases of microRNA Targets
RmiR.hsa Francesco Favero Various databases of microRNA Targets
Roberts2005Annotation.db Biocore Data Team Roberts2005Annotation Annotation Data (Roberts2005Annotation)
SHDZ.db Biocore Data Team SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ)
SNPlocs.Hsapiens.dbSNP.20071016 H. Pages SNP locations for Homo sapiens
SNPlocs.Hsapiens.dbSNP.20080617 H. Pages SNP locations for Homo sapiens
SNPlocs.Hsapiens.dbSNP.20090506 H. Pages SNP locations for Homo sapiens (dbSNP BUILD 130)
SNPlocs.Hsapiens.dbSNP.20100427 H. Pages SNP locations for Homo sapiens (dbSNP BUILD 131)
test1cdf Biocore Data Team test1cdf
test2cdf Biocore Data Team test2cdf
test3cdf Biocore Data Team test3cdf
test3probe Biocore Data Team Probe sequence data for microarrays of type test3
u133aaofav2cdf Biocore Data Team u133aaofav2cdf
u133x3p.db Biocore Data Team Affymetrix Human X3P Array annotation data (chip u133x3p)
u133x3pcdf Biocore Data Team u133x3pcdf
u133x3pprobe Biocore Data Team Probe sequence data for microarrays of type u133x3p