Bioconductor version: 2.6
q-order partial correlation graphs, or qp-graphs for short, are undirected Gaussian graphical Markov models built from q-order partial correlations. They are useful for learning undirected graphical Gaussian Markov models from data sets where the number of random variables p exceeds the available sample size n as, for instance, in the case of microarray data where they can be employed to reverse engineer a molecular regulatory network.
Author: R. Castelo and A. Roverato
Maintainer: Robert Castelo <robert.castelo at upf.edu>
To install this package, start R and enter:
    source("http://bioconductor.org/biocLite.R")
    biocLite("qpgraph")
    To cite this package in a publication, start R and enter:
    citation("qpgraph")
    | qpPCCdistbyTF.pdf | ||
| qpPreRecComparison.pdf | ||
| qpPreRecComparisonFullRecall.pdf | ||
| qpTRnet50pctpre.pdf | ||
| R Script | Reverse-engineer transcriptional regulatory networks using qpgraph | |
| Reference Manual | 
| biocViews | Microarray, GeneExpression, Transcription, Pathways, Bioinformatics, GraphsAndNetworks | 
| Depends | methods, Biobase(>= 2.5.5), AnnotationDbi | 
| Imports | methods, Biobase(>= 2.5.5), AnnotationDbi | 
| Suggests | mvtnorm, graph, Rgraphviz, annotate, genefilter, Category(>= 2.9.7), org.EcK12.eg.db(>= 2.2.6), GOstats | 
| System Requirements | |
| License | GPL (>= 2) | 
| URL | http://functionalgenomics.upf.edu/qpgraph | 
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.4.1 | 
| Since | Bioconductor 2.4 (R-2.9) | 
| Package Source | qpgraph_1.4.1.tar.gz | 
| Windows Binary | qpgraph_1.4.1.zip (32- & 64-bit) | 
| MacOS 10.5 (Leopard) binary | qpgraph_1.4.1.tgz | 
| Package Downloads Report | Download Stats | 
 
  
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