| Package | Maintainer | Title |
|---|---|---|
| adSplit | Claudio Lottaz | Annotation-Driven Clustering |
| BHC | Rich Savage | Bayesian Hierarchical Clustering |
| BicARE | Pierre Gestraud | Biclustering Analysis and Results Exploration |
| CGEN | William Wheeler | An R package for analysis of case-control studies in genetic epidemiology |
| ChemmineR | ChemmineR Team | Analysis of Small Molecule and Screening Data |
| clusterProfiler | Guangchuang Yu | statistical analysis and visulization of functional profiles for genes and gene clusters |
| clusterStab | James W. MacDonald | Compute cluster stability scores for microarray data |
| ConsensusClusterPlus | Matt Wilkerson | ConsensusClusterPlus |
| CORREP | Dongxiao Zhu | Multivariate Correlation Estimator and Statistical Inference Procedures. |
| ctc | Antoine Lucas | Cluster and Tree Conversion. |
| EBarrays | Ming Yuan | Unified Approach for Simultaneous Gene Clustering and Differential Expression Identification |
| fabia | Sepp Hochreiter | FABIA: Factor Analysis for Bicluster Acquisition |
| flowClust | Raphael Gottardo | Clustering for Flow Cytometry |
| flowFP | Herb Holyst | Fingerprinting for Flow Cytometry |
| flowMeans | Nima Aghaeepour | Non-parametric Flow Cytometry Data Gating |
| flowMerge | Greg Finak | Cluster Merging for Flow Cytometry Data |
| flowPhyto | David M. Schruth | Methods for Continuous Flow Cytometry |
| geneRecommender | Greg Hather | A gene recommender algorithm to identify genes coexpressed with a query set of genes |
| GOSemSim | Guangchuang Yu | GO-terms Semantic Similarity Measures |
| hopach | Katherine S. Pollard | Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH) |
| maanova | Keith Sheppard | Tools for analyzing Micro Array experiments |
| made4 | Aedin Culhane | Multivariate analysis of microarray data using ADE4 |
| maigesPack | Gustavo H. Esteves | Functions to handle cDNA microarray data, including several methods of data analysis |
| MantelCorr | Brian Steinmeyer | Compute Mantel Cluster Correlations |
| mcaGUI | Wade K. Copeland | Microbial Community Analysis GUI |
| methVisual | Arie Zackay | Methods for visualization and statistics on DNA methylation data |
| Mfuzz | Matthias Futschik | Soft clustering of time series gene expression data |
| MLInterfaces | V. Carey | Uniform interfaces to R machine learning procedures for data in Bioconductor containers |
| netresponse | Leo Lahti | NetResponse: functional network analysis |
| phenoTest | Evarist Planet | Tools to test correlation between gene expression and phenotype. |
| PICS | Arnaud Droit , Xuekui Zhang , Raphael Gottardo | Probabilistic inference of ChIP-seq |
| puma | Richard Pearson , Li Zhang | Propagating Uncertainty in Microarray Analysis |
| RBioinf | Robert Gentleman | RBioinf |
| RTools4TB | Aurelie Bergon | Data mining of public microarray data through connections to the TranscriptomeBrowser database. |
| SAGx | Per Broberg, | Statistical Analysis of the GeneChip |
| SamSPECTRAL | Habil Zare | Identifies cell population in flow cytometry data. |
| SpeCond | Florence Cavalli | Condition specific detection from expression data |