interacCircos

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see interacCircos.

The Generation of Interactive Circos Plot


Bioconductor version: 3.15

Implement in an efficient approach to display the genomic data, relationship, information in an interactive circular genome(Circos) plot. 'interacCircos' are inspired by 'circosJS', 'BioCircos.js' and 'NG-Circos' and we integrate the modules of 'circosJS', 'BioCircos.js' and 'NG-Circos' into this R package, based on 'htmlwidgets' framework.

Author: Zhe Cui [aut, cre]

Maintainer: Zhe Cui <mrcuizhe at gmail.com>

Citation (from within R, enter citation("interacCircos")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("interacCircos")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("interacCircos")
interacCircos HTML R Script
Reference Manual PDF

Details

biocViews Software, Visualization
Version 1.6.0
In Bioconductor since BioC 3.13 (R-4.1) (3 years)
License GPL-3
Depends R (>= 4.1)
Imports RColorBrewer, htmlwidgets, plyr, methods
System Requirements
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Suggests knitr, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package interacCircos_1.6.0.tar.gz
Windows Binary interacCircos_1.6.0.zip
macOS Binary (x86_64) interacCircos_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/interacCircos
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/interacCircos
Bioc Package Browser https://code.bioconductor.org/browse/interacCircos/
Package Short Url https://bioconductor.org/packages/interacCircos/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.15 Source Archive