TargetScoreData

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see TargetScoreData.

TargetScoreData


Bioconductor version: 3.15

Precompiled and processed miRNA-overexpression fold-changes from 84 Gene Expression Omnibus (GEO) series corresponding to 6 platforms, 77 human cells or tissues, and 113 distinct miRNAs. Accompanied with the data, we also included in this package the sequence feature scores from TargetScanHuman 6.1 including the context+ score and the probabilities of conserved targeting for each miRNA-mRNA interaction. Thus, the user can use these static sequence-based scores together with user-supplied tissue/cell-specific fold-change due to miRNA overexpression to predict miRNA targets using the package TargetScore (download separately)

Author: Yue Li

Maintainer: Yue Li <yueli at cs.toronto.edu>

Citation (from within R, enter citation("TargetScoreData")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TargetScoreData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TargetScoreData")
Processed human microRNA-overexpression data from GEO, and sequence information from TargetScan, and targetScore from TargetScore PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData, RNASeqData, miRNAData
Version 1.32.0
License GPL-2
Depends
Imports
System Requirements
URL
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Suggests TargetScore, gplots
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me TargetScore
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TargetScoreData_1.32.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository git clone https://git.bioconductor.org/packages/TargetScoreData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TargetScoreData
Package Short Url https://bioconductor.org/packages/TargetScoreData/
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